Job ID = 12237410
SRX = SRX1970608
Genome = rm6
Started at	210330_16:43:02

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 119980834 spots for SRR3944620/SRR3944620.sra
Written 119980834 spots for SRR3944620/SRR3944620.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 10333185402 Mar 30 16:58 SRR3944620_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku  8902388717 Mar 30 16:58 SRR3944620_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX1970608.sum.gz
 output alignment file  :SRX1970608.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 56159 ms)
 -FM-Index for g2a genome.... finished (elapsed: 116088 ms)
 -suffix array for c2t genome.... finished (elapsed: 151739 ms)
 -suffix array for g2a genome.... finished (elapsed: 186025 ms)
 -reference sequence.... finished (elapsed: 189133 ms)
Index loading finished.
File(s) loaded: SRR3944620_1.fastq.gz, SRR3944620_2.fastq.gz.
Time elapsed:12237262 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX1970608’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 13728895198 Mar 30 20:39 SRX1970608.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  2351662200 Mar 30 20:39 SRX1970608.sum.gz
SRX1970608.sum.gz was set to analysis list.
Analyzing SRX1970608.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5337 Mar 30 21:02 SRX1970608.mapsum.html
Processing "SRX1970608.bisulalign.gz" (13728895198 bytes)
*****: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 21:10 SRX1970608.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      561902 Mar 30 21:18 SRX1970608.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX1970608.graph
Output File (methyl)    :SRX1970608.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX1970608.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX1970608.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   231086960 Mar 30 21:32 SRX1970608.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   161902488 Mar 30 21:32 SRX1970608.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   273266793 Mar 30 21:32 SRX1970608.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    1362030 Mar 30 22:37 SRX1970608.hmr
-rw-r--r-- 1 okishinya so-ddmku      50236 Mar 30 22:37 SRX1970608.pmd
-rw-r--r-- 1 okishinya so-ddmku    6971411 Mar 30 22:37 SRX1970608.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 234530047 Mar 30 22:43 SRX1970608.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 221316463 Mar 30 22:40 SRX1970608.cpg.methyl.bw

=-=-=num_reads	119980834
=-=-=mapping_rate_1	0.882
=-=-=mapping_rate_2	0.877
=-=-=methyl_rate_cpg_total	0.726
=-=-=methyl_rate_cpg_lambda	0
=-=-=low_methyl_region	56868
=-=-=partial_methyl_region	2100
=-=-=high_methyl_region	288768
=-=-=coverage	3.76341
=-=-=end	210330_22:43:47
=-=-=duration	6.012