Job ID = 12237400
SRX = SRX1970607
Genome = rm6
Started at	210330_16:05:07

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 86028884 spots for SRR3944619/SRR3944619.sra
Written 86028884 spots for SRR3944619/SRR3944619.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 7386934304 Mar 30 16:17 SRR3944619_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 6101321907 Mar 30 16:17 SRR3944619_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX1970607.sum.gz
 output alignment file  :SRX1970607.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 37868 ms)
 -FM-Index for g2a genome.... finished (elapsed: 76051 ms)
 -suffix array for c2t genome.... finished (elapsed: 107346 ms)
 -suffix array for g2a genome.... finished (elapsed: 137508 ms)
 -reference sequence.... finished (elapsed: 141097 ms)
Index loading finished.
File(s) loaded: SRR3944619_1.fastq.gz, SRR3944619_2.fastq.gz.
Time elapsed:10694293 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX1970607’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 10315645269 Mar 30 19:28 SRX1970607.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1683250689 Mar 30 19:28 SRX1970607.sum.gz
SRX1970607.sum.gz was set to analysis list.
Analyzing SRX1970607.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5647 Mar 30 19:47 SRX1970607.mapsum.html
Processing "SRX1970607.bisulalign.gz" (10315645269 bytes)
*********: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 19:58 SRX1970607.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      559748 Mar 30 20:06 SRX1970607.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX1970607.graph
Output File (methyl)    :SRX1970607.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX1970607.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX1970607.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   227964260 Mar 30 20:22 SRX1970607.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   145164476 Mar 30 20:22 SRX1970607.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   266319230 Mar 30 20:22 SRX1970607.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku   1116195 Mar 30 21:17 SRX1970607.hmr
-rw-r--r-- 1 okishinya so-ddmku     45001 Mar 30 21:17 SRX1970607.pmd
-rw-r--r-- 1 okishinya so-ddmku   6714194 Mar 30 21:17 SRX1970607.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 216097677 Mar 30 21:24 SRX1970607.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 197973874 Mar 30 21:21 SRX1970607.cpg.methyl.bw

=-=-=num_reads	86028881
=-=-=mapping_rate_1	0.865
=-=-=mapping_rate_2	0.854
=-=-=methyl_rate_cpg_total	0.67
=-=-=methyl_rate_cpg_lambda	0.001
=-=-=low_methyl_region	46595
=-=-=partial_methyl_region	1881
=-=-=high_methyl_region	278112
=-=-=coverage	2.66475
=-=-=end	210330_21:25:12
=-=-=duration	5.334