Job ID = 12237392
SRX = SRX1970606
Genome = rm6
Started at	210330_15:45:39

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 80562787 spots for SRR3944618/SRR3944618.sra
Written 80562787 spots for SRR3944618/SRR3944618.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 6997910067 Mar 30 15:55 SRR3944618_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 5651330116 Mar 30 15:55 SRR3944618_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX1970606.sum.gz
 output alignment file  :SRX1970606.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 52926 ms)
 -FM-Index for g2a genome.... finished (elapsed: 107596 ms)
 -suffix array for c2t genome.... finished (elapsed: 117575 ms)
 -suffix array for g2a genome.... finished (elapsed: 127343 ms)
 -reference sequence.... finished (elapsed: 127716 ms)
Index loading finished.
File(s) loaded: SRR3944618_1.fastq.gz, SRR3944618_2.fastq.gz.
Time elapsed:7259771 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX1970606’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 10787266421 Mar 30 18:08 SRX1970606.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1581706145 Mar 30 18:08 SRX1970606.sum.gz
SRX1970606.sum.gz was set to analysis list.
Analyzing SRX1970606.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5303 Mar 30 18:25 SRX1970606.mapsum.html
Processing "SRX1970606.bisulalign.gz" (10787266421 bytes)
***********************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 18:34 SRX1970606.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      559767 Mar 30 18:42 SRX1970606.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX1970606.graph
Output File (methyl)    :SRX1970606.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX1970606.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX1970606.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   228672554 Mar 30 18:56 SRX1970606.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   140237679 Mar 30 18:56 SRX1970606.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   267183618 Mar 30 18:56 SRX1970606.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku   1122407 Mar 30 19:41 SRX1970606.hmr
-rw-r--r-- 1 okishinya so-ddmku     41087 Mar 30 19:41 SRX1970606.pmd
-rw-r--r-- 1 okishinya so-ddmku   7229073 Mar 30 19:41 SRX1970606.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 209535461 Mar 30 19:49 SRX1970606.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 193780692 Mar 30 19:46 SRX1970606.cpg.methyl.bw

=-=-=num_reads	80562785
=-=-=mapping_rate_1	0.872
=-=-=mapping_rate_2	0.86
=-=-=methyl_rate_cpg_total	0.675
=-=-=methyl_rate_cpg_lambda	0
=-=-=low_methyl_region	46858
=-=-=partial_methyl_region	1718
=-=-=high_methyl_region	299653
=-=-=coverage	2.84352
=-=-=end	210330_19:49:40
=-=-=duration	4.066