Job ID = 12237418
SRX = SRX1970605
Genome = rm6
Started at	210330_16:52:55

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 172278968 spots for SRR3944617/SRR3944617.sra
Written 172278968 spots for SRR3944617/SRR3944617.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 15693651255 Mar 30 17:11 SRR3944617_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 13832001548 Mar 30 17:11 SRR3944617_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX1970605.sum.gz
 output alignment file  :SRX1970605.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 30687 ms)
 -FM-Index for g2a genome.... finished (elapsed: 61114 ms)
 -suffix array for c2t genome.... finished (elapsed: 90306 ms)
 -suffix array for g2a genome.... finished (elapsed: 118817 ms)
 -reference sequence.... finished (elapsed: 121810 ms)
Index loading finished.
File(s) loaded: SRR3944617_1.fastq.gz, SRR3944617_2.fastq.gz.
Time elapsed:19156454 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX1970605’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 25641710629 Mar 30 22:49 SRX1970605.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  3397486990 Mar 30 22:49 SRX1970605.sum.gz
SRX1970605.sum.gz was set to analysis list.
Analyzing SRX1970605.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5165 Mar 30 23:21 SRX1970605.mapsum.html
Processing "SRX1970605.bisulalign.gz" (25641710629 bytes)
*********************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 23:32 SRX1970605.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      566061 Mar 30 23:38 SRX1970605.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX1970605.graph
Output File (methyl)    :SRX1970605.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX1970605.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX1970605.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   238313820 Mar 30 23:50 SRX1970605.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   161722052 Mar 30 23:50 SRX1970605.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   284462902 Mar 30 23:50 SRX1970605.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku   1371141 Mar 31 00:28 SRX1970605.hmr
-rw-r--r-- 1 okishinya so-ddmku     42046 Mar 31 00:28 SRX1970605.pmd
-rw-r--r-- 1 okishinya so-ddmku   7631556 Mar 31 00:28 SRX1970605.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 226212267 Mar 31 00:33 SRX1970605.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 218637146 Mar 31 00:30 SRX1970605.cpg.methyl.bw

=-=-=num_reads	172278967
=-=-=mapping_rate_1	0.884
=-=-=mapping_rate_2	0.879
=-=-=methyl_rate_cpg_total	0.713
=-=-=methyl_rate_cpg_lambda	0
=-=-=low_methyl_region	57251
=-=-=partial_methyl_region	1759
=-=-=high_methyl_region	316267
=-=-=coverage	6.81287
=-=-=end	210331_00:33:40
=-=-=duration	7.679