Job ID = 12237330
SRX = SRX1970603
Genome = rm6
Started at	210330_14:51:59

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 53702112 spots for SRR3944615/SRR3944615.sra
Written 53702112 spots for SRR3944615/SRR3944615.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 4633140204 Mar 30 14:57 SRR3944615_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3789626389 Mar 30 14:57 SRR3944615_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX1970603.sum.gz
 output alignment file  :SRX1970603.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 29798 ms)
 -FM-Index for g2a genome.... finished (elapsed: 60019 ms)
 -suffix array for c2t genome.... finished (elapsed: 72586 ms)
 -suffix array for g2a genome.... finished (elapsed: 84649 ms)
 -reference sequence.... finished (elapsed: 85495 ms)
Index loading finished.
File(s) loaded: SRR3944615_1.fastq.gz, SRR3944615_2.fastq.gz.
Time elapsed:6774003 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX1970603’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 8009450347 Mar 30 16:56 SRX1970603.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 1059164779 Mar 30 16:56 SRX1970603.sum.gz
SRX1970603.sum.gz was set to analysis list.
Analyzing SRX1970603.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4944 Mar 30 17:06 SRX1970603.mapsum.html
Processing "SRX1970603.bisulalign.gz" (8009450347 bytes)
**********************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:11 SRX1970603.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      559616 Mar 30 17:17 SRX1970603.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX1970603.graph
Output File (methyl)    :SRX1970603.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX1970603.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX1970603.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   225964502 Mar 30 17:29 SRX1970603.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   135103778 Mar 30 17:29 SRX1970603.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   257328985 Mar 30 17:29 SRX1970603.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku   1176840 Mar 30 18:17 SRX1970603.hmr
-rw-r--r-- 1 okishinya so-ddmku     39125 Mar 30 18:17 SRX1970603.pmd
-rw-r--r-- 1 okishinya so-ddmku   7865281 Mar 30 18:17 SRX1970603.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 206394434 Mar 30 18:22 SRX1970603.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 186260226 Mar 30 18:19 SRX1970603.cpg.methyl.bw

=-=-=num_reads	53702111
=-=-=mapping_rate_1	0.878
=-=-=mapping_rate_2	0.867
=-=-=methyl_rate_cpg_total	0.733
=-=-=methyl_rate_cpg_lambda	0
=-=-=low_methyl_region	49130
=-=-=partial_methyl_region	1637
=-=-=high_methyl_region	326199
=-=-=coverage	1.86895
=-=-=end	210330_18:22:22
=-=-=duration	3.506