Job ID = 12237337
SRX = SRX1970602
Genome = rm6
Started at	210330_14:54:14

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 56051898 spots for SRR3944614/SRR3944614.sra
Written 56051898 spots for SRR3944614/SRR3944614.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 4806895108 Mar 30 15:00 SRR3944614_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3857305295 Mar 30 15:00 SRR3944614_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX1970602.sum.gz
 output alignment file  :SRX1970602.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 30253 ms)
 -FM-Index for g2a genome.... finished (elapsed: 60163 ms)
 -suffix array for c2t genome.... finished (elapsed: 73466 ms)
 -suffix array for g2a genome.... finished (elapsed: 86210 ms)
 -reference sequence.... finished (elapsed: 87194 ms)
Index loading finished.
File(s) loaded: SRR3944614_1.fastq.gz, SRR3944614_2.fastq.gz.
Time elapsed:6945870 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX1970602’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 7319484083 Mar 30 17:01 SRX1970602.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 1088071787 Mar 30 17:01 SRX1970602.sum.gz
SRX1970602.sum.gz was set to analysis list.
Analyzing SRX1970602.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       5432 Mar 30 17:11 SRX1970602.mapsum.html
Processing "SRX1970602.bisulalign.gz" (7319484083 bytes)
***************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:16 SRX1970602.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      559528 Mar 30 17:22 SRX1970602.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX1970602.graph
Output File (methyl)    :SRX1970602.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX1970602.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX1970602.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   226579469 Mar 30 17:34 SRX1970602.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   111849140 Mar 30 17:34 SRX1970602.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   256222887 Mar 30 17:34 SRX1970602.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    952428 Mar 30 18:05 SRX1970602.hmr
-rw-r--r-- 1 okishinya so-ddmku     33663 Mar 30 18:05 SRX1970602.pmd
-rw-r--r-- 1 okishinya so-ddmku   7971624 Mar 30 18:05 SRX1970602.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 176256948 Mar 30 18:09 SRX1970602.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 158503754 Mar 30 18:07 SRX1970602.cpg.methyl.bw

=-=-=num_reads	56051897
=-=-=mapping_rate_1	0.861
=-=-=mapping_rate_2	0.851
=-=-=methyl_rate_cpg_total	0.675
=-=-=methyl_rate_cpg_lambda	0
=-=-=low_methyl_region	39755
=-=-=partial_methyl_region	1407
=-=-=high_methyl_region	331192
=-=-=coverage	2.04977
=-=-=end	210330_18:09:21
=-=-=duration	3.251