Job ID = 12237407
SRX = SRX1970601
Genome = rm6
Started at	210330_16:36:55

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 101299660 spots for SRR3944613/SRR3944613.sra
Written 101299660 spots for SRR3944613/SRR3944613.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 8429904496 Mar 30 16:49 SRR3944613_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 7136157335 Mar 30 16:49 SRR3944613_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX1970601.sum.gz
 output alignment file  :SRX1970601.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 56086 ms)
 -FM-Index for g2a genome.... finished (elapsed: 113256 ms)
 -suffix array for c2t genome.... finished (elapsed: 141951 ms)
 -suffix array for g2a genome.... finished (elapsed: 175734 ms)
 -reference sequence.... finished (elapsed: 178937 ms)
Index loading finished.
File(s) loaded: SRR3944613_1.fastq.gz, SRR3944613_2.fastq.gz.
Time elapsed:8906159 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX1970601’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 14999442098 Mar 30 19:32 SRX1970601.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1979721107 Mar 30 19:32 SRX1970601.sum.gz
SRX1970601.sum.gz was set to analysis list.
Analyzing SRX1970601.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5542 Mar 30 19:57 SRX1970601.mapsum.html
Processing "SRX1970601.bisulalign.gz" (14999442098 bytes)
****: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 20:04 SRX1970601.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      561884 Mar 30 20:12 SRX1970601.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX1970601.graph
Output File (methyl)    :SRX1970601.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX1970601.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX1970601.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   231756228 Mar 30 20:26 SRX1970601.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   152629976 Mar 30 20:26 SRX1970601.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   271775626 Mar 30 20:26 SRX1970601.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku   1352854 Mar 30 21:25 SRX1970601.hmr
-rw-r--r-- 1 okishinya so-ddmku     44195 Mar 30 21:25 SRX1970601.pmd
-rw-r--r-- 1 okishinya so-ddmku   7994316 Mar 30 21:25 SRX1970601.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 221446949 Mar 30 21:31 SRX1970601.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 208040530 Mar 30 21:28 SRX1970601.cpg.methyl.bw

=-=-=num_reads	101299658
=-=-=mapping_rate_1	0.878
=-=-=mapping_rate_2	0.873
=-=-=methyl_rate_cpg_total	0.708
=-=-=methyl_rate_cpg_lambda	0
=-=-=low_methyl_region	56477
=-=-=partial_methyl_region	1847
=-=-=high_methyl_region	331497
=-=-=coverage	4.01102
=-=-=end	210330_21:31:45
=-=-=duration	4.913