Job ID = 12237419
SRX = SRX1659591
Genome = rm6
Started at	210330_16:54:10

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 128527442 spots for SRR3289670/SRR3289670.sra
Written 128527442 spots for SRR3289670/SRR3289670.sra
Read 100732992 spots for SRR3289671/SRR3289671.sra
Written 100732992 spots for SRR3289671/SRR3289671.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 6160910518 Mar 30 17:19 SRR3289671_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 5973802391 Mar 30 17:19 SRR3289671_2.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 8119751527 Mar 30 17:08 SRR3289670_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 7831290077 Mar 30 17:08 SRR3289670_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX1659591.sum.gz
 output alignment file  :SRX1659591.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 30589 ms)
 -FM-Index for g2a genome.... finished (elapsed: 61023 ms)
 -suffix array for c2t genome.... finished (elapsed: 82431 ms)
 -suffix array for g2a genome.... finished (elapsed: 91340 ms)
 -reference sequence.... finished (elapsed: 91736 ms)
Index loading finished.
File(s) loaded: SRR3289670_1.fastq.gz, SRR3289670_2.fastq.gz.
File(s) loaded: SRR3289671_1.fastq.gz, SRR3289671_2.fastq.gz.
Time elapsed:24035423 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX1659591’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 19637699665 Mar 31 00:25 SRX1659591.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  4187790788 Mar 31 00:25 SRX1659591.sum.gz
SRX1659591.sum.gz was set to analysis list.
Analyzing SRX1659591.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5353 Mar 31 00:51 SRX1659591.mapsum.html
Processing "SRX1659591.bisulalign.gz" (19637699665 bytes)
*************************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 31 01:04 SRX1659591.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      563971 Mar 31 01:11 SRX1659591.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX1659591.graph
Output File (methyl)    :SRX1659591.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX1659591.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX1659591.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   228497325 Mar 31 01:24 SRX1659591.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   185459483 Mar 31 01:24 SRX1659591.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   265045393 Mar 31 01:24 SRX1659591.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    1922944 Mar 31 02:17 SRX1659591.hmr
-rw-r--r-- 1 okishinya so-ddmku     118023 Mar 31 02:17 SRX1659591.pmd
-rw-r--r-- 1 okishinya so-ddmku    5823081 Mar 31 02:17 SRX1659591.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku  265920928 Mar 31 02:23 SRX1659591.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  244790916 Mar 31 02:20 SRX1659591.cpg.methyl.bw

=-=-=num_reads	229260434
=-=-=mapping_rate_1	0.79
=-=-=mapping_rate_2	0.784
=-=-=methyl_rate_cpg_total	0.789
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	79037
=-=-=partial_methyl_region	4578
=-=-=high_methyl_region	240399
=-=-=coverage	3.64306
=-=-=end	210331_02:23:55
=-=-=duration	9.495