Job ID = 12237428
SRX = SRX1659590
Genome = rm6
Started at	210330_17:10:53

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 122912185 spots for SRR3289668/SRR3289668.sra
Written 122912185 spots for SRR3289668/SRR3289668.sra
Read 170999412 spots for SRR3289669/SRR3289669.sra
Written 170999412 spots for SRR3289669/SRR3289669.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 9911624968 Mar 30 17:46 SRR3289669_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 9963255853 Mar 30 17:46 SRR3289669_2.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 7498194880 Mar 30 17:25 SRR3289668_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 7387555685 Mar 30 17:25 SRR3289668_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX1659590.sum.gz
 output alignment file  :SRX1659590.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 54004 ms)
 -FM-Index for g2a genome.... finished (elapsed: 110770 ms)
 -suffix array for c2t genome.... finished (elapsed: 143600 ms)
 -suffix array for g2a genome.... finished (elapsed: 177027 ms)
 -reference sequence.... finished (elapsed: 180456 ms)
Index loading finished.
File(s) loaded: SRR3289668_1.fastq.gz, SRR3289668_2.fastq.gz.
File(s) loaded: SRR3289669_1.fastq.gz, SRR3289669_2.fastq.gz.
Time elapsed:23231647 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX1659590’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 21454049983 Mar 31 00:53 SRX1659590.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  5268286635 Mar 31 00:53 SRX1659590.sum.gz
SRX1659590.sum.gz was set to analysis list.
Analyzing SRX1659590.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5689 Mar 31 01:32 SRX1659590.mapsum.html
Processing "SRX1659590.bisulalign.gz" (21454049983 bytes)
*******************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 31 01:51 SRX1659590.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      563996 Mar 31 01:59 SRX1659590.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX1659590.graph
Output File (methyl)    :SRX1659590.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX1659590.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX1659590.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   229222079 Mar 31 02:14 SRX1659590.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   190120779 Mar 31 02:14 SRX1659590.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   269813505 Mar 31 02:14 SRX1659590.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    1956778 Mar 31 03:21 SRX1659590.hmr
-rw-r--r-- 1 okishinya so-ddmku     143107 Mar 31 03:21 SRX1659590.pmd
-rw-r--r-- 1 okishinya so-ddmku    5772977 Mar 31 03:21 SRX1659590.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku  269801796 Mar 31 03:28 SRX1659590.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  252090851 Mar 31 03:24 SRX1659590.cpg.methyl.bw

=-=-=num_reads	293911594
=-=-=mapping_rate_1	0.78
=-=-=mapping_rate_2	0.764
=-=-=methyl_rate_cpg_total	0.763
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	79909
=-=-=partial_methyl_region	5402
=-=-=high_methyl_region	238465
=-=-=coverage	3.94898
=-=-=end	210331_03:28:59
=-=-=duration	10.301