Job ID = 12237402
SRX = ERX202466
Genome = rm6
Started at	210330_16:10:29

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 92173446 spots for ERR227807/ERR227807.sra
Written 92173446 spots for ERR227807/ERR227807.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 8530076448 Mar 30 16:20 ERR227807_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 7521894967 Mar 30 16:20 ERR227807_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202466.sum.gz
 output alignment file  :ERX202466.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 28406 ms)
 -FM-Index for g2a genome.... finished (elapsed: 57180 ms)
 -suffix array for c2t genome.... finished (elapsed: 74761 ms)
 -suffix array for g2a genome.... finished (elapsed: 104925 ms)
 -reference sequence.... finished (elapsed: 108511 ms)
Index loading finished.
File(s) loaded: ERR227807_1.fastq.gz, ERR227807_2.fastq.gz.
Time elapsed:9979476 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202466’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 15862549102 Mar 30 19:17 ERX202466.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1909237021 Mar 30 19:17 ERX202466.sum.gz
ERX202466.sum.gz was set to analysis list.
Analyzing ERX202466.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6103 Mar 30 19:37 ERX202466.mapsum.html
Processing "ERX202466.bisulalign.gz" (15862549102 bytes)
************************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 19:43 ERX202466.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      553490 Mar 30 19:49 ERX202466.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202466.graph
Output File (methyl)    :ERX202466.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202466.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202466.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   232405126 Mar 30 20:00 ERX202466.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   138369975 Mar 30 20:00 ERX202466.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   272138373 Mar 30 20:00 ERX202466.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    970576 Mar 30 20:42 ERX202466.hmr
-rw-r--r-- 1 okishinya so-ddmku     48550 Mar 30 20:42 ERX202466.pmd
-rw-r--r-- 1 okishinya so-ddmku   7340276 Mar 30 20:42 ERX202466.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 195958983 Mar 30 20:46 ERX202466.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 191397648 Mar 30 20:44 ERX202466.cpg.methyl.bw

=-=-=num_reads	92173444
=-=-=mapping_rate_1	0.98
=-=-=mapping_rate_2	0.98
=-=-=methyl_rate_cpg_total	0.669
=-=-=methyl_rate_cpg_lambda	0.127
=-=-=low_methyl_region	40510
=-=-=partial_methyl_region	2023
=-=-=high_methyl_region	308073
=-=-=coverage	4.95125
=-=-=end	210330_20:46:50
=-=-=duration	4.605