Job ID = 12237380
SRX = ERX202465
Genome = rm6
Started at	210330_15:02:05

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 71649965 spots for ERR227806/ERR227806.sra
Written 71649965 spots for ERR227806/ERR227806.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 6353411936 Mar 30 15:10 ERR227806_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 5631477149 Mar 30 15:10 ERR227806_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202465.sum.gz
 output alignment file  :ERX202465.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 29688 ms)
 -FM-Index for g2a genome.... finished (elapsed: 58946 ms)
 -suffix array for c2t genome.... finished (elapsed: 67628 ms)
 -suffix array for g2a genome.... finished (elapsed: 97777 ms)
 -reference sequence.... finished (elapsed: 102413 ms)
Index loading finished.
File(s) loaded: ERR227806_1.fastq.gz, ERR227806_2.fastq.gz.
Time elapsed:8319709 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202465’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 12368330730 Mar 30 17:37 ERX202465.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1479523394 Mar 30 17:37 ERX202465.sum.gz
ERX202465.sum.gz was set to analysis list.
Analyzing ERX202465.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6022 Mar 30 17:53 ERX202465.mapsum.html
Processing "ERX202465.bisulalign.gz" (12368330730 bytes)
****: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:59 ERX202465.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      553377 Mar 30 18:05 ERX202465.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202465.graph
Output File (methyl)    :ERX202465.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202465.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202465.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   230701935 Mar 30 18:18 ERX202465.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   125752993 Mar 30 18:18 ERX202465.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   266645182 Mar 30 18:18 ERX202465.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    941598 Mar 30 19:01 ERX202465.hmr
-rw-r--r-- 1 okishinya so-ddmku     47549 Mar 30 19:01 ERX202465.pmd
-rw-r--r-- 1 okishinya so-ddmku   7786749 Mar 30 19:01 ERX202465.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 183055742 Mar 30 19:05 ERX202465.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 176717769 Mar 30 19:03 ERX202465.cpg.methyl.bw

=-=-=num_reads	71649965
=-=-=mapping_rate_1	0.98
=-=-=mapping_rate_2	0.979
=-=-=methyl_rate_cpg_total	0.658
=-=-=methyl_rate_cpg_lambda	0.129
=-=-=low_methyl_region	39296
=-=-=partial_methyl_region	1988
=-=-=high_methyl_region	326797
=-=-=coverage	3.92916
=-=-=end	210330_19:06:05
=-=-=duration	4.066