Job ID = 12237356
SRX = ERX202464
Genome = rm6
Started at	210330_14:56:35

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 63881296 spots for ERR227805/ERR227805.sra
Written 63881296 spots for ERR227805/ERR227805.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 5376809542 Mar 30 15:03 ERR227805_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 4781947861 Mar 30 15:03 ERR227805_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202464.sum.gz
 output alignment file  :ERX202464.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 29313 ms)
 -FM-Index for g2a genome.... finished (elapsed: 58514 ms)
 -suffix array for c2t genome.... finished (elapsed: 66507 ms)
 -suffix array for g2a genome.... finished (elapsed: 74154 ms)
 -reference sequence.... finished (elapsed: 74401 ms)
Index loading finished.
File(s) loaded: ERR227805_1.fastq.gz, ERR227805_2.fastq.gz.
Time elapsed:8115617 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202464’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 11035264706 Mar 30 17:26 ERX202464.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1321219485 Mar 30 17:26 ERX202464.sum.gz
ERX202464.sum.gz was set to analysis list.
Analyzing ERX202464.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6184 Mar 30 17:40 ERX202464.mapsum.html
Processing "ERX202464.bisulalign.gz" (11035264706 bytes)
***********************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:45 ERX202464.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      551311 Mar 30 17:51 ERX202464.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202464.graph
Output File (methyl)    :ERX202464.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202464.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202464.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   229837371 Mar 30 18:02 ERX202464.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   120261805 Mar 30 18:02 ERX202464.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   263924078 Mar 30 18:02 ERX202464.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    915183 Mar 30 18:41 ERX202464.hmr
-rw-r--r-- 1 okishinya so-ddmku     44803 Mar 30 18:41 ERX202464.pmd
-rw-r--r-- 1 okishinya so-ddmku   7944277 Mar 30 18:41 ERX202464.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 177347709 Mar 30 18:45 ERX202464.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 169955710 Mar 30 18:43 ERX202464.cpg.methyl.bw

=-=-=num_reads	63881293
=-=-=mapping_rate_1	0.98
=-=-=mapping_rate_2	0.979
=-=-=methyl_rate_cpg_total	0.653
=-=-=methyl_rate_cpg_lambda	0.132
=-=-=low_methyl_region	38201
=-=-=partial_methyl_region	1872
=-=-=high_methyl_region	333368
=-=-=coverage	3.5248
=-=-=end	210330_18:45:20
=-=-=duration	3.812