Job ID = 12237343
SRX = ERX202463
Genome = rm6
Started at	210330_14:54:56

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 57663547 spots for ERR227804/ERR227804.sra
Written 57663547 spots for ERR227804/ERR227804.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 4915089151 Mar 30 15:01 ERR227804_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 4206284397 Mar 30 15:01 ERR227804_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202463.sum.gz
 output alignment file  :ERX202463.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 29552 ms)
 -FM-Index for g2a genome.... finished (elapsed: 59513 ms)
 -suffix array for c2t genome.... finished (elapsed: 68344 ms)
 -suffix array for g2a genome.... finished (elapsed: 76983 ms)
 -reference sequence.... finished (elapsed: 77290 ms)
Index loading finished.
File(s) loaded: ERR227804_1.fastq.gz, ERR227804_2.fastq.gz.
Time elapsed:7173123 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202463’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 9981031951 Mar 30 17:07 ERX202463.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 1191683137 Mar 30 17:07 ERX202463.sum.gz
ERX202463.sum.gz was set to analysis list.
Analyzing ERX202463.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       5826 Mar 30 17:19 ERX202463.mapsum.html
Processing "ERX202463.bisulalign.gz" (9981031951 bytes)
******: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:25 ERX202463.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      551225 Mar 30 17:31 ERX202463.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202463.graph
Output File (methyl)    :ERX202463.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202463.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202463.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   229187533 Mar 30 17:43 ERX202463.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   114474738 Mar 30 17:43 ERX202463.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   261794321 Mar 30 17:43 ERX202463.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    904984 Mar 30 18:20 ERX202463.hmr
-rw-r--r-- 1 okishinya so-ddmku     41422 Mar 30 18:20 ERX202463.pmd
-rw-r--r-- 1 okishinya so-ddmku   8176054 Mar 30 18:20 ERX202463.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 170868954 Mar 30 18:24 ERX202463.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 162796868 Mar 30 18:22 ERX202463.cpg.methyl.bw

=-=-=num_reads	57663546
=-=-=mapping_rate_1	0.98
=-=-=mapping_rate_2	0.978
=-=-=methyl_rate_cpg_total	0.644
=-=-=methyl_rate_cpg_lambda	0.129
=-=-=low_methyl_region	37777
=-=-=partial_methyl_region	1732
=-=-=high_methyl_region	343122
=-=-=coverage	3.20765
=-=-=end	210330_18:24:22
=-=-=duration	3.490