Job ID = 12237403
SRX = ERX202462
Genome = rm6
Started at	210330_16:32:25

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 92419126 spots for ERR227803/ERR227803.sra
Written 92419126 spots for ERR227803/ERR227803.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 8653610644 Mar 30 16:44 ERR227803_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 7581096486 Mar 30 16:44 ERR227803_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202462.sum.gz
 output alignment file  :ERX202462.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 54514 ms)
 -FM-Index for g2a genome.... finished (elapsed: 111245 ms)
 -suffix array for c2t genome.... finished (elapsed: 145163 ms)
 -suffix array for g2a genome.... finished (elapsed: 175760 ms)
 -reference sequence.... finished (elapsed: 180494 ms)
Index loading finished.
File(s) loaded: ERR227803_1.fastq.gz, ERR227803_2.fastq.gz.
Time elapsed:8268336 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202462’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 15721758423 Mar 30 19:15 ERX202462.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1914400092 Mar 30 19:15 ERX202462.sum.gz
ERX202462.sum.gz was set to analysis list.
Analyzing ERX202462.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6120 Mar 30 19:42 ERX202462.mapsum.html
Processing "ERX202462.bisulalign.gz" (15721758423 bytes)
*******: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 19:51 ERX202462.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      553508 Mar 30 19:58 ERX202462.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202462.graph
Output File (methyl)    :ERX202462.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202462.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202462.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   231904926 Mar 30 20:12 ERX202462.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   136094905 Mar 30 20:12 ERX202462.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   270554774 Mar 30 20:12 ERX202462.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    923814 Mar 30 21:03 ERX202462.hmr
-rw-r--r-- 1 okishinya so-ddmku     49280 Mar 30 21:03 ERX202462.pmd
-rw-r--r-- 1 okishinya so-ddmku   7320764 Mar 30 21:03 ERX202462.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 193315449 Mar 30 21:09 ERX202462.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 188399572 Mar 30 21:06 ERX202462.cpg.methyl.bw

=-=-=num_reads	92419126
=-=-=mapping_rate_1	0.98
=-=-=mapping_rate_2	0.98
=-=-=methyl_rate_cpg_total	0.669
=-=-=methyl_rate_cpg_lambda	0.16
=-=-=low_methyl_region	38554
=-=-=partial_methyl_region	2050
=-=-=high_methyl_region	307256
=-=-=coverage	5.09144
=-=-=end	210330_21:09:20
=-=-=duration	4.615