Job ID = 12237399
SRX = ERX202461
Genome = rm6
Started at	210330_15:55:07

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 84393339 spots for ERR227802/ERR227802.sra
Written 84393339 spots for ERR227802/ERR227802.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 7592557708 Mar 30 16:05 ERR227802_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 6737877613 Mar 30 16:05 ERR227802_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202461.sum.gz
 output alignment file  :ERX202461.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 33921 ms)
 -FM-Index for g2a genome.... finished (elapsed: 67583 ms)
 -suffix array for c2t genome.... finished (elapsed: 97856 ms)
 -suffix array for g2a genome.... finished (elapsed: 126812 ms)
 -reference sequence.... finished (elapsed: 129911 ms)
Index loading finished.
File(s) loaded: ERR227802_1.fastq.gz, ERR227802_2.fastq.gz.
Time elapsed:10338483 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202461’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 14421835094 Mar 30 19:07 ERX202461.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1741823133 Mar 30 19:07 ERX202461.sum.gz
ERX202461.sum.gz was set to analysis list.
Analyzing ERX202461.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6105 Mar 30 19:26 ERX202461.mapsum.html
Processing "ERX202461.bisulalign.gz" (14421835094 bytes)
*************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 19:32 ERX202461.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      553411 Mar 30 19:38 ERX202461.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202461.graph
Output File (methyl)    :ERX202461.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202461.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202461.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   231378711 Mar 30 19:50 ERX202461.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   130603823 Mar 30 19:50 ERX202461.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   268476474 Mar 30 19:50 ERX202461.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    917866 Mar 30 20:30 ERX202461.hmr
-rw-r--r-- 1 okishinya so-ddmku     47703 Mar 30 20:30 ERX202461.pmd
-rw-r--r-- 1 okishinya so-ddmku   7564809 Mar 30 20:30 ERX202461.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 187491685 Mar 30 20:34 ERX202461.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 182046120 Mar 30 20:32 ERX202461.cpg.methyl.bw

=-=-=num_reads	84393338
=-=-=mapping_rate_1	0.98
=-=-=mapping_rate_2	0.98
=-=-=methyl_rate_cpg_total	0.663
=-=-=methyl_rate_cpg_lambda	0.159
=-=-=low_methyl_region	38307
=-=-=partial_methyl_region	1987
=-=-=high_methyl_region	317469
=-=-=coverage	4.74928
=-=-=end	210330_20:35:02
=-=-=duration	4.665