Job ID = 12237346
SRX = ERX202460
Genome = rm6
Started at	210330_14:55:25

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 58589090 spots for ERR227801/ERR227801.sra
Written 58589090 spots for ERR227801/ERR227801.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 4920080863 Mar 30 15:01 ERR227801_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 4279783734 Mar 30 15:01 ERR227801_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202460.sum.gz
 output alignment file  :ERX202460.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 30387 ms)
 -FM-Index for g2a genome.... finished (elapsed: 60222 ms)
 -suffix array for c2t genome.... finished (elapsed: 74350 ms)
 -suffix array for g2a genome.... finished (elapsed: 87516 ms)
 -reference sequence.... finished (elapsed: 88417 ms)
Index loading finished.
File(s) loaded: ERR227801_1.fastq.gz, ERR227801_2.fastq.gz.
Time elapsed:6954023 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202460’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 10009834019 Mar 30 17:04 ERX202460.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1210150159 Mar 30 17:04 ERX202460.sum.gz
ERX202460.sum.gz was set to analysis list.
Analyzing ERX202460.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6164 Mar 30 17:16 ERX202460.mapsum.html
Processing "ERX202460.bisulalign.gz" (10009834019 bytes)
*********: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:21 ERX202460.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      551241 Mar 30 17:27 ERX202460.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202460.graph
Output File (methyl)    :ERX202460.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202460.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202460.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   229093028 Mar 30 17:39 ERX202460.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   112473189 Mar 30 17:39 ERX202460.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   261035963 Mar 30 17:39 ERX202460.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    860312 Mar 30 18:15 ERX202460.hmr
-rw-r--r-- 1 okishinya so-ddmku     44035 Mar 30 18:15 ERX202460.pmd
-rw-r--r-- 1 okishinya so-ddmku   8161289 Mar 30 18:15 ERX202460.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 168406685 Mar 30 18:19 ERX202460.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 160599002 Mar 30 18:17 ERX202460.cpg.methyl.bw

=-=-=num_reads	58589090
=-=-=mapping_rate_1	0.98
=-=-=mapping_rate_2	0.979
=-=-=methyl_rate_cpg_total	0.646
=-=-=methyl_rate_cpg_lambda	0.158
=-=-=low_methyl_region	35920
=-=-=partial_methyl_region	1838
=-=-=high_methyl_region	342500
=-=-=coverage	3.29392
=-=-=end	210330_18:19:14
=-=-=duration	3.396