Job ID = 12237316
SRX = ERX202459
Genome = rm6
Started at	210330_14:51:29

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 46180091 spots for ERR227800/ERR227800.sra
Written 46180091 spots for ERR227800/ERR227800.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 4346293096 Mar 30 14:58 ERR227800_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3801751526 Mar 30 14:58 ERR227800_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202459.sum.gz
 output alignment file  :ERX202459.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 35180 ms)
 -FM-Index for g2a genome.... finished (elapsed: 71451 ms)
 -suffix array for c2t genome.... finished (elapsed: 80927 ms)
 -suffix array for g2a genome.... finished (elapsed: 89915 ms)
 -reference sequence.... finished (elapsed: 90215 ms)
Index loading finished.
File(s) loaded: ERR227800_1.fastq.gz, ERR227800_2.fastq.gz.
Time elapsed:7935001 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202459’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 8064440605 Mar 30 17:18 ERX202459.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  957467119 Mar 30 17:18 ERX202459.sum.gz
ERX202459.sum.gz was set to analysis list.
Analyzing ERX202459.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6004 Mar 30 17:32 ERX202459.mapsum.html
Processing "ERX202459.bisulalign.gz" (8064440605 bytes)
*****************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:39 ERX202459.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      551130 Mar 30 17:46 ERX202459.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202459.graph
Output File (methyl)    :ERX202459.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202459.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202459.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   227591937 Mar 30 18:02 ERX202459.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   107361928 Mar 30 18:02 ERX202459.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   258319179 Mar 30 18:02 ERX202459.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    873102 Mar 30 18:51 ERX202459.hmr
-rw-r--r-- 1 okishinya so-ddmku     41474 Mar 30 18:51 ERX202459.pmd
-rw-r--r-- 1 okishinya so-ddmku   8373780 Mar 30 18:51 ERX202459.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 163703929 Mar 30 18:57 ERX202459.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 154852667 Mar 30 18:54 ERX202459.cpg.methyl.bw

=-=-=num_reads	46180090
=-=-=mapping_rate_1	0.981
=-=-=mapping_rate_2	0.98
=-=-=methyl_rate_cpg_total	0.641
=-=-=methyl_rate_cpg_lambda	0.135
=-=-=low_methyl_region	36451
=-=-=partial_methyl_region	1733
=-=-=high_methyl_region	351402
=-=-=coverage	2.47441
=-=-=end	210330_18:57:40
=-=-=duration	4.103