Job ID = 12237379
SRX = ERX202458
Genome = rm6
Started at	210330_15:02:05

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 71266262 spots for ERR227799/ERR227799.sra
Written 71266262 spots for ERR227799/ERR227799.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 6350426547 Mar 30 15:10 ERR227799_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 5625280910 Mar 30 15:10 ERR227799_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202458.sum.gz
 output alignment file  :ERX202458.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 30470 ms)
 -FM-Index for g2a genome.... finished (elapsed: 60381 ms)
 -suffix array for c2t genome.... finished (elapsed: 73592 ms)
 -suffix array for g2a genome.... finished (elapsed: 103745 ms)
 -reference sequence.... finished (elapsed: 108374 ms)
Index loading finished.
File(s) loaded: ERR227799_1.fastq.gz, ERR227799_2.fastq.gz.
Time elapsed:8389845 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202458’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 12464828144 Mar 30 17:38 ERX202458.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1474074567 Mar 30 17:38 ERX202458.sum.gz
ERX202458.sum.gz was set to analysis list.
Analyzing ERX202458.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6173 Mar 30 17:54 ERX202458.mapsum.html
Processing "ERX202458.bisulalign.gz" (12464828144 bytes)
******************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 18:00 ERX202458.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      553392 Mar 30 18:06 ERX202458.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202458.graph
Output File (methyl)    :ERX202458.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202458.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202458.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   230681254 Mar 30 18:19 ERX202458.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   126316423 Mar 30 18:19 ERX202458.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   266620275 Mar 30 18:19 ERX202458.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    934741 Mar 30 19:02 ERX202458.hmr
-rw-r--r-- 1 okishinya so-ddmku     46852 Mar 30 19:02 ERX202458.pmd
-rw-r--r-- 1 okishinya so-ddmku   7763156 Mar 30 19:02 ERX202458.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 183860831 Mar 30 19:06 ERX202458.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 177661727 Mar 30 19:04 ERX202458.cpg.methyl.bw

=-=-=num_reads	71266261
=-=-=mapping_rate_1	0.981
=-=-=mapping_rate_2	0.98
=-=-=methyl_rate_cpg_total	0.658
=-=-=methyl_rate_cpg_lambda	0.135
=-=-=low_methyl_region	39019
=-=-=partial_methyl_region	1952
=-=-=high_methyl_region	325781
=-=-=coverage	3.8999
=-=-=end	210330_19:06:47
=-=-=duration	4.078