Job ID = 12237352
SRX = ERX202457
Genome = rm6
Started at	210330_14:56:06

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 61109108 spots for ERR227798/ERR227798.sra
Written 61109108 spots for ERR227798/ERR227798.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 5103812121 Mar 30 15:03 ERR227798_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 4506766293 Mar 30 15:03 ERR227798_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202457.sum.gz
 output alignment file  :ERX202457.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 32790 ms)
 -FM-Index for g2a genome.... finished (elapsed: 64472 ms)
 -suffix array for c2t genome.... finished (elapsed: 79257 ms)
 -suffix array for g2a genome.... finished (elapsed: 94011 ms)
 -reference sequence.... finished (elapsed: 95257 ms)
Index loading finished.
File(s) loaded: ERR227798_1.fastq.gz, ERR227798_2.fastq.gz.
Time elapsed:7695514 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202457’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 10694480557 Mar 30 17:18 ERX202457.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1264442068 Mar 30 17:18 ERX202457.sum.gz
ERX202457.sum.gz was set to analysis list.
Analyzing ERX202457.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5848 Mar 30 17:33 ERX202457.mapsum.html
Processing "ERX202457.bisulalign.gz" (10694480557 bytes)
********************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:39 ERX202457.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      551308 Mar 30 17:45 ERX202457.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202457.graph
Output File (methyl)    :ERX202457.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202457.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202457.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   229573172 Mar 30 17:57 ERX202457.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   118335616 Mar 30 17:57 ERX202457.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   263149955 Mar 30 17:57 ERX202457.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    919031 Mar 30 18:36 ERX202457.hmr
-rw-r--r-- 1 okishinya so-ddmku     44015 Mar 30 18:36 ERX202457.pmd
-rw-r--r-- 1 okishinya so-ddmku   8027674 Mar 30 18:36 ERX202457.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 175396584 Mar 30 18:41 ERX202457.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 167895012 Mar 30 18:38 ERX202457.cpg.methyl.bw

=-=-=num_reads	61109105
=-=-=mapping_rate_1	0.98
=-=-=mapping_rate_2	0.979
=-=-=methyl_rate_cpg_total	0.65
=-=-=methyl_rate_cpg_lambda	0.134
=-=-=low_methyl_region	38354
=-=-=partial_methyl_region	1839
=-=-=high_methyl_region	336905
=-=-=coverage	3.36041
=-=-=end	210330_18:41:21
=-=-=duration	3.754