Job ID = 12237406
SRX = ERX202456
Genome = rm6
Started at	210330_16:34:55

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 96329989 spots for ERR227797/ERR227797.sra
Written 96329989 spots for ERR227797/ERR227797.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 9012774943 Mar 30 16:47 ERR227797_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 8048090786 Mar 30 16:47 ERR227797_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202456.sum.gz
 output alignment file  :ERX202456.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 54192 ms)
 -FM-Index for g2a genome.... finished (elapsed: 112218 ms)
 -suffix array for c2t genome.... finished (elapsed: 143009 ms)
 -suffix array for g2a genome.... finished (elapsed: 174853 ms)
 -reference sequence.... finished (elapsed: 178208 ms)
Index loading finished.
File(s) loaded: ERR227797_1.fastq.gz, ERR227797_2.fastq.gz.
Time elapsed:8880219 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202456’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 17143583457 Mar 30 19:29 ERX202456.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  2002075160 Mar 30 19:29 ERX202456.sum.gz
ERX202456.sum.gz was set to analysis list.
Analyzing ERX202456.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6203 Mar 30 19:57 ERX202456.mapsum.html
Processing "ERX202456.bisulalign.gz" (17143583457 bytes)
***********: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 20:07 ERX202456.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      553494 Mar 30 20:15 ERX202456.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202456.graph
Output File (methyl)    :ERX202456.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202456.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202456.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   233014302 Mar 30 20:29 ERX202456.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   139251279 Mar 30 20:29 ERX202456.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   273527719 Mar 30 20:29 ERX202456.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    982472 Mar 30 21:21 ERX202456.hmr
-rw-r--r-- 1 okishinya so-ddmku     50626 Mar 30 21:21 ERX202456.pmd
-rw-r--r-- 1 okishinya so-ddmku   7320737 Mar 30 21:21 ERX202456.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 196954786 Mar 30 21:26 ERX202456.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 192933853 Mar 30 21:23 ERX202456.cpg.methyl.bw

=-=-=num_reads	96329987
=-=-=mapping_rate_1	0.981
=-=-=mapping_rate_2	0.98
=-=-=methyl_rate_cpg_total	0.674
=-=-=methyl_rate_cpg_lambda	0.112
=-=-=low_methyl_region	41010
=-=-=partial_methyl_region	2108
=-=-=high_methyl_region	307176
=-=-=coverage	5.00327
=-=-=end	210330_21:26:44
=-=-=duration	4.863