Job ID = 12237391
SRX = ERX202455
Genome = rm6
Started at	210330_15:44:39

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 78576070 spots for ERR227796/ERR227796.sra
Written 78576070 spots for ERR227796/ERR227796.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 7132974341 Mar 30 15:54 ERR227796_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 6278854342 Mar 30 15:54 ERR227796_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202455.sum.gz
 output alignment file  :ERX202455.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 52927 ms)
 -FM-Index for g2a genome.... finished (elapsed: 108608 ms)
 -suffix array for c2t genome.... finished (elapsed: 126303 ms)
 -suffix array for g2a genome.... finished (elapsed: 144072 ms)
 -reference sequence.... finished (elapsed: 145455 ms)
Index loading finished.
File(s) loaded: ERR227796_1.fastq.gz, ERR227796_2.fastq.gz.
Time elapsed:7583460 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202455’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 14015394068 Mar 30 18:12 ERX202455.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1629636494 Mar 30 18:12 ERX202455.sum.gz
ERX202455.sum.gz was set to analysis list.
Analyzing ERX202455.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6186 Mar 30 18:35 ERX202455.mapsum.html
Processing "ERX202455.bisulalign.gz" (14015394068 bytes)
*****************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 18:43 ERX202455.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      553418 Mar 30 18:50 ERX202455.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202455.graph
Output File (methyl)    :ERX202455.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202455.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202455.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   231561124 Mar 30 19:04 ERX202455.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   128927443 Mar 30 19:04 ERX202455.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   269013465 Mar 30 19:04 ERX202455.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    966845 Mar 30 19:53 ERX202455.hmr
-rw-r--r-- 1 okishinya so-ddmku     46980 Mar 30 19:53 ERX202455.pmd
-rw-r--r-- 1 okishinya so-ddmku   7704132 Mar 30 19:53 ERX202455.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 186475381 Mar 30 19:58 ERX202455.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 181014500 Mar 30 19:56 ERX202455.cpg.methyl.bw

=-=-=num_reads	78576069
=-=-=mapping_rate_1	0.981
=-=-=mapping_rate_2	0.979
=-=-=methyl_rate_cpg_total	0.664
=-=-=methyl_rate_cpg_lambda	0.112
=-=-=low_methyl_region	40353
=-=-=partial_methyl_region	1958
=-=-=high_methyl_region	323292
=-=-=coverage	4.16177
=-=-=end	210330_19:58:55
=-=-=duration	4.237