Job ID = 12237364
SRX = ERX202454
Genome = rm6
Started at	210330_14:58:13

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 67408177 spots for ERR227795/ERR227795.sra
Written 67408177 spots for ERR227795/ERR227795.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 5700373748 Mar 30 15:05 ERR227795_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 5097055897 Mar 30 15:05 ERR227795_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202454.sum.gz
 output alignment file  :ERX202454.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 28255 ms)
 -FM-Index for g2a genome.... finished (elapsed: 56380 ms)
 -suffix array for c2t genome.... finished (elapsed: 64086 ms)
 -suffix array for g2a genome.... finished (elapsed: 71506 ms)
 -reference sequence.... finished (elapsed: 71760 ms)
Index loading finished.
File(s) loaded: ERR227795_1.fastq.gz, ERR227795_2.fastq.gz.
Time elapsed:7796370 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202454’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 12034053970 Mar 30 17:22 ERX202454.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1398452950 Mar 30 17:22 ERX202454.sum.gz
ERX202454.sum.gz was set to analysis list.
Analyzing ERX202454.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6076 Mar 30 17:38 ERX202454.mapsum.html
Processing "ERX202454.bisulalign.gz" (12034053970 bytes)
************************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:45 ERX202454.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      553330 Mar 30 17:50 ERX202454.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202454.graph
Output File (methyl)    :ERX202454.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202454.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202454.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   230382494 Mar 30 18:02 ERX202454.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   121212870 Mar 30 18:02 ERX202454.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   265460953 Mar 30 18:02 ERX202454.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    936303 Mar 30 18:41 ERX202454.hmr
-rw-r--r-- 1 okishinya so-ddmku     46237 Mar 30 18:41 ERX202454.pmd
-rw-r--r-- 1 okishinya so-ddmku   7964546 Mar 30 18:41 ERX202454.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 178403405 Mar 30 18:47 ERX202454.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 171728512 Mar 30 18:44 ERX202454.cpg.methyl.bw

=-=-=num_reads	67408174
=-=-=mapping_rate_1	0.981
=-=-=mapping_rate_2	0.979
=-=-=methyl_rate_cpg_total	0.657
=-=-=methyl_rate_cpg_lambda	0.114
=-=-=low_methyl_region	39081
=-=-=partial_methyl_region	1929
=-=-=high_methyl_region	334259
=-=-=coverage	3.60453
=-=-=end	210330_18:48:06
=-=-=duration	3.831