Job ID = 12237401
SRX = ERX202453
Genome = rm6
Started at	210330_16:06:22

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 89241763 spots for ERR227794/ERR227794.sra
Written 89241763 spots for ERR227794/ERR227794.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 8253304430 Mar 30 16:17 ERR227794_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 7081487467 Mar 30 16:17 ERR227794_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202453.sum.gz
 output alignment file  :ERX202453.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 29837 ms)
 -FM-Index for g2a genome.... finished (elapsed: 59897 ms)
 -suffix array for c2t genome.... finished (elapsed: 69442 ms)
 -suffix array for g2a genome.... finished (elapsed: 78240 ms)
 -reference sequence.... finished (elapsed: 78588 ms)
Index loading finished.
File(s) loaded: ERR227794_1.fastq.gz, ERR227794_2.fastq.gz.
Time elapsed:10702173 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202453’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 15753859302 Mar 30 19:26 ERX202453.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1846504282 Mar 30 19:26 ERX202453.sum.gz
ERX202453.sum.gz was set to analysis list.
Analyzing ERX202453.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5739 Mar 30 19:45 ERX202453.mapsum.html
Processing "ERX202453.bisulalign.gz" (15753859302 bytes)
******************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 19:52 ERX202453.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      553527 Mar 30 19:58 ERX202453.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202453.graph
Output File (methyl)    :ERX202453.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202453.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202453.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   231588569 Mar 30 20:09 ERX202453.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   131651849 Mar 30 20:09 ERX202453.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   269037863 Mar 30 20:09 ERX202453.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    898747 Mar 30 20:49 ERX202453.hmr
-rw-r--r-- 1 okishinya so-ddmku     49331 Mar 30 20:49 ERX202453.pmd
-rw-r--r-- 1 okishinya so-ddmku   7530631 Mar 30 20:49 ERX202453.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 188380239 Mar 30 20:53 ERX202453.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 183525868 Mar 30 20:51 ERX202453.cpg.methyl.bw

=-=-=num_reads	89241759
=-=-=mapping_rate_1	0.979
=-=-=mapping_rate_2	0.979
=-=-=methyl_rate_cpg_total	0.663
=-=-=methyl_rate_cpg_lambda	0.179
=-=-=low_methyl_region	37512
=-=-=partial_methyl_region	2056
=-=-=high_methyl_region	316064
=-=-=coverage	5.10315
=-=-=end	210330_20:54:11
=-=-=duration	4.796