Job ID = 12237353
SRX = ERX202452
Genome = rm6
Started at	210330_14:56:06

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 61486646 spots for ERR227793/ERR227793.sra
Written 61486646 spots for ERR227793/ERR227793.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 5156548995 Mar 30 15:03 ERR227793_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 4528764257 Mar 30 15:03 ERR227793_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202452.sum.gz
 output alignment file  :ERX202452.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 29448 ms)
 -FM-Index for g2a genome.... finished (elapsed: 58440 ms)
 -suffix array for c2t genome.... finished (elapsed: 70030 ms)
 -suffix array for g2a genome.... finished (elapsed: 84802 ms)
 -reference sequence.... finished (elapsed: 86045 ms)
Index loading finished.
File(s) loaded: ERR227793_1.fastq.gz, ERR227793_2.fastq.gz.
Time elapsed:7326410 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202452’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 10867016840 Mar 30 17:12 ERX202452.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1270885461 Mar 30 17:12 ERX202452.sum.gz
ERX202452.sum.gz was set to analysis list.
Analyzing ERX202452.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6123 Mar 30 17:27 ERX202452.mapsum.html
Processing "ERX202452.bisulalign.gz" (10867016840 bytes)
: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:33 ERX202452.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      551344 Mar 30 17:39 ERX202452.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202452.graph
Output File (methyl)    :ERX202452.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202452.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202452.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   229413275 Mar 30 17:51 ERX202452.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   112510296 Mar 30 17:51 ERX202452.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   261624923 Mar 30 17:51 ERX202452.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    856288 Mar 30 18:30 ERX202452.hmr
-rw-r--r-- 1 okishinya so-ddmku     44123 Mar 30 18:30 ERX202452.pmd
-rw-r--r-- 1 okishinya so-ddmku   8286306 Mar 30 18:30 ERX202452.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 167964832 Mar 30 18:35 ERX202452.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 161041662 Mar 30 18:32 ERX202452.cpg.methyl.bw

=-=-=num_reads	61486645
=-=-=mapping_rate_1	0.978
=-=-=mapping_rate_2	0.978
=-=-=methyl_rate_cpg_total	0.643
=-=-=methyl_rate_cpg_lambda	0.179
=-=-=low_methyl_region	35744
=-=-=partial_methyl_region	1842
=-=-=high_methyl_region	347767
=-=-=coverage	3.57372
=-=-=end	210330_18:35:14
=-=-=duration	3.652