Job ID = 12237348
SRX = ERX202451
Genome = rm6
Started at	210330_14:55:40

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 59273304 spots for ERR227792/ERR227792.sra
Written 59273304 spots for ERR227792/ERR227792.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 4970772320 Mar 30 15:02 ERR227792_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 4310285839 Mar 30 15:02 ERR227792_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202451.sum.gz
 output alignment file  :ERX202451.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 29116 ms)
 -FM-Index for g2a genome.... finished (elapsed: 57991 ms)
 -suffix array for c2t genome.... finished (elapsed: 66147 ms)
 -suffix array for g2a genome.... finished (elapsed: 73866 ms)
 -reference sequence.... finished (elapsed: 74125 ms)
Index loading finished.
File(s) loaded: ERR227792_1.fastq.gz, ERR227792_2.fastq.gz.
Time elapsed:6837608 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202451’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 10481910979 Mar 30 17:02 ERX202451.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1225020198 Mar 30 17:02 ERX202451.sum.gz
ERX202451.sum.gz was set to analysis list.
Analyzing ERX202451.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6051 Mar 30 17:16 ERX202451.mapsum.html
Processing "ERX202451.bisulalign.gz" (10481910979 bytes)
*: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:21 ERX202451.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      551284 Mar 30 17:27 ERX202451.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202451.graph
Output File (methyl)    :ERX202451.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202451.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202451.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   229231537 Mar 30 17:39 ERX202451.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   110372644 Mar 30 17:39 ERX202451.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   260962693 Mar 30 17:39 ERX202451.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    844612 Mar 30 18:15 ERX202451.hmr
-rw-r--r-- 1 okishinya so-ddmku     44421 Mar 30 18:15 ERX202451.pmd
-rw-r--r-- 1 okishinya so-ddmku   8367964 Mar 30 18:15 ERX202451.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 165458941 Mar 30 18:19 ERX202451.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 158408484 Mar 30 18:17 ERX202451.cpg.methyl.bw

=-=-=num_reads	59273302
=-=-=mapping_rate_1	0.978
=-=-=mapping_rate_2	0.978
=-=-=methyl_rate_cpg_total	0.64
=-=-=methyl_rate_cpg_lambda	0.177
=-=-=low_methyl_region	35256
=-=-=partial_methyl_region	1855
=-=-=high_methyl_region	351203
=-=-=coverage	3.47122
=-=-=end	210330_18:19:34
=-=-=duration	3.398