Job ID = 12237388
SRX = ERX202450
Genome = rm6
Started at	210330_15:43:30

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 77092662 spots for ERR227791/ERR227791.sra
Written 77092662 spots for ERR227791/ERR227791.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 7184015767 Mar 30 15:53 ERR227791_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 6191515579 Mar 30 15:53 ERR227791_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202450.sum.gz
 output alignment file  :ERX202450.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 32711 ms)
 -FM-Index for g2a genome.... finished (elapsed: 66045 ms)
 -suffix array for c2t genome.... finished (elapsed: 97152 ms)
 -suffix array for g2a genome.... finished (elapsed: 128102 ms)
 -reference sequence.... finished (elapsed: 129779 ms)
Index loading finished.
File(s) loaded: ERR227791_1.fastq.gz, ERR227791_2.fastq.gz.
Time elapsed:9633814 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202450’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 13993205380 Mar 30 18:43 ERX202450.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1599445940 Mar 30 18:43 ERX202450.sum.gz
ERX202450.sum.gz was set to analysis list.
Analyzing ERX202450.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6110 Mar 30 19:01 ERX202450.mapsum.html
Processing "ERX202450.bisulalign.gz" (13993205380 bytes)
*: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 19:07 ERX202450.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      553358 Mar 30 19:13 ERX202450.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202450.graph
Output File (methyl)    :ERX202450.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202450.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202450.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   230596321 Mar 30 19:24 ERX202450.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   123717750 Mar 30 19:24 ERX202450.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   265752982 Mar 30 19:24 ERX202450.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    863180 Mar 30 20:03 ERX202450.hmr
-rw-r--r-- 1 okishinya so-ddmku     47074 Mar 30 20:03 ERX202450.pmd
-rw-r--r-- 1 okishinya so-ddmku   7760587 Mar 30 20:03 ERX202450.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 180198429 Mar 30 20:07 ERX202450.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 174086482 Mar 30 20:05 ERX202450.cpg.methyl.bw

=-=-=num_reads	77092661
=-=-=mapping_rate_1	0.98
=-=-=mapping_rate_2	0.98
=-=-=methyl_rate_cpg_total	0.656
=-=-=methyl_rate_cpg_lambda	0.181
=-=-=low_methyl_region	36029
=-=-=partial_methyl_region	1965
=-=-=high_methyl_region	325748
=-=-=coverage	4.32079
=-=-=end	210330_20:07:32
=-=-=duration	4.400