Job ID = 12237345
SRX = ERX202449
Genome = rm6
Started at	210330_14:55:10

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 58538436 spots for ERR227790/ERR227790.sra
Written 58538436 spots for ERR227790/ERR227790.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 4889295088 Mar 30 15:01 ERR227790_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 4250862303 Mar 30 15:01 ERR227790_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202449.sum.gz
 output alignment file  :ERX202449.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 30822 ms)
 -FM-Index for g2a genome.... finished (elapsed: 60784 ms)
 -suffix array for c2t genome.... finished (elapsed: 69614 ms)
 -suffix array for g2a genome.... finished (elapsed: 77746 ms)
 -reference sequence.... finished (elapsed: 78061 ms)
Index loading finished.
File(s) loaded: ERR227790_1.fastq.gz, ERR227790_2.fastq.gz.
Time elapsed:6949578 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202449’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 10626291286 Mar 30 17:04 ERX202449.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1212685327 Mar 30 17:04 ERX202449.sum.gz
ERX202449.sum.gz was set to analysis list.
Analyzing ERX202449.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5979 Mar 30 17:18 ERX202449.mapsum.html
Processing "ERX202449.bisulalign.gz" (10626291286 bytes)
**********************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:23 ERX202449.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      551281 Mar 30 17:29 ERX202449.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202449.graph
Output File (methyl)    :ERX202449.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202449.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202449.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   229057171 Mar 30 17:41 ERX202449.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   109394098 Mar 30 17:41 ERX202449.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   260541862 Mar 30 17:41 ERX202449.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    821503 Mar 30 18:17 ERX202449.hmr
-rw-r--r-- 1 okishinya so-ddmku     43924 Mar 30 18:17 ERX202449.pmd
-rw-r--r-- 1 okishinya so-ddmku   8358299 Mar 30 18:17 ERX202449.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 164261728 Mar 30 18:21 ERX202449.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 157096908 Mar 30 18:19 ERX202449.cpg.methyl.bw

=-=-=num_reads	58538434
=-=-=mapping_rate_1	0.979
=-=-=mapping_rate_2	0.978
=-=-=methyl_rate_cpg_total	0.639
=-=-=methyl_rate_cpg_lambda	0.183
=-=-=low_methyl_region	34287
=-=-=partial_methyl_region	1834
=-=-=high_methyl_region	350773
=-=-=coverage	3.3801
=-=-=end	210330_18:21:49
=-=-=duration	3.444