Job ID = 12237336
SRX = ERX202448
Genome = rm6
Started at	210330_14:53:59

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 55600538 spots for ERR227789/ERR227789.sra
Written 55600538 spots for ERR227789/ERR227789.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 4580458923 Mar 30 15:00 ERR227789_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3990250582 Mar 30 15:00 ERR227789_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202448.sum.gz
 output alignment file  :ERX202448.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 29165 ms)
 -FM-Index for g2a genome.... finished (elapsed: 58154 ms)
 -suffix array for c2t genome.... finished (elapsed: 67835 ms)
 -suffix array for g2a genome.... finished (elapsed: 80772 ms)
 -reference sequence.... finished (elapsed: 81930 ms)
Index loading finished.
File(s) loaded: ERR227789_1.fastq.gz, ERR227789_2.fastq.gz.
Time elapsed:6584322 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202448’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 10100827337 Mar 30 16:55 ERX202448.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1152003075 Mar 30 16:55 ERX202448.sum.gz
ERX202448.sum.gz was set to analysis list.
Analyzing ERX202448.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6140 Mar 30 17:09 ERX202448.mapsum.html
Processing "ERX202448.bisulalign.gz" (10100827337 bytes)
*******************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:14 ERX202448.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      551222 Mar 30 17:20 ERX202448.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202448.graph
Output File (methyl)    :ERX202448.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202448.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202448.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   228820952 Mar 30 17:32 ERX202448.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   106379344 Mar 30 17:32 ERX202448.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   259596596 Mar 30 17:32 ERX202448.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    820853 Mar 30 18:06 ERX202448.hmr
-rw-r--r-- 1 okishinya so-ddmku     43205 Mar 30 18:06 ERX202448.pmd
-rw-r--r-- 1 okishinya so-ddmku   8511135 Mar 30 18:06 ERX202448.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 160689744 Mar 30 18:10 ERX202448.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 153375814 Mar 30 18:08 ERX202448.cpg.methyl.bw

=-=-=num_reads	55600537
=-=-=mapping_rate_1	0.979
=-=-=mapping_rate_2	0.978
=-=-=methyl_rate_cpg_total	0.635
=-=-=methyl_rate_cpg_lambda	0.18
=-=-=low_methyl_region	34270
=-=-=partial_methyl_region	1805
=-=-=high_methyl_region	357170
=-=-=coverage	3.24279
=-=-=end	210330_18:10:20
=-=-=duration	3.272