Job ID = 12237350
SRX = ERX202446
Genome = rm6
Started at	210330_14:55:40

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 59396072 spots for ERR227787/ERR227787.sra
Written 59396072 spots for ERR227787/ERR227787.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 5004607676 Mar 30 15:02 ERR227787_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 4372263032 Mar 30 15:02 ERR227787_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202446.sum.gz
 output alignment file  :ERX202446.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 32744 ms)
 -FM-Index for g2a genome.... finished (elapsed: 65752 ms)
 -suffix array for c2t genome.... finished (elapsed: 81985 ms)
 -suffix array for g2a genome.... finished (elapsed: 98122 ms)
 -reference sequence.... finished (elapsed: 99557 ms)
Index loading finished.
File(s) loaded: ERR227787_1.fastq.gz, ERR227787_2.fastq.gz.
Time elapsed:7840230 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202446’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 10514408302 Mar 30 17:19 ERX202446.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1227110377 Mar 30 17:19 ERX202446.sum.gz
ERX202446.sum.gz was set to analysis list.
Analyzing ERX202446.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5822 Mar 30 17:33 ERX202446.mapsum.html
Processing "ERX202446.bisulalign.gz" (10514408302 bytes)
**: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:38 ERX202446.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      551316 Mar 30 17:44 ERX202446.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202446.graph
Output File (methyl)    :ERX202446.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202446.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202446.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   228591780 Mar 30 17:56 ERX202446.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   107473504 Mar 30 17:56 ERX202446.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   258993444 Mar 30 17:56 ERX202446.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    778601 Mar 30 18:30 ERX202446.hmr
-rw-r--r-- 1 okishinya so-ddmku     43292 Mar 30 18:30 ERX202446.pmd
-rw-r--r-- 1 okishinya so-ddmku   8274376 Mar 30 18:30 ERX202446.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 162127167 Mar 30 18:34 ERX202446.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 154684684 Mar 30 18:32 ERX202446.cpg.methyl.bw

=-=-=num_reads	59396066
=-=-=mapping_rate_1	0.979
=-=-=mapping_rate_2	0.979
=-=-=methyl_rate_cpg_total	0.635
=-=-=methyl_rate_cpg_lambda	0.234
=-=-=low_methyl_region	32504
=-=-=partial_methyl_region	1809
=-=-=high_methyl_region	347341
=-=-=coverage	3.52868
=-=-=end	210330_18:34:54
=-=-=duration	3.653