Job ID = 12237341
SRX = ERX202445
Genome = rm6
Started at	210330_14:54:29

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 56831820 spots for ERR227786/ERR227786.sra
Written 56831820 spots for ERR227786/ERR227786.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 4744480493 Mar 30 15:01 ERR227786_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 4142792649 Mar 30 15:01 ERR227786_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202445.sum.gz
 output alignment file  :ERX202445.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 51716 ms)
 -FM-Index for g2a genome.... finished (elapsed: 106321 ms)
 -suffix array for c2t genome.... finished (elapsed: 118614 ms)
 -suffix array for g2a genome.... finished (elapsed: 130255 ms)
 -reference sequence.... finished (elapsed: 130685 ms)
Index loading finished.
File(s) loaded: ERR227786_1.fastq.gz, ERR227786_2.fastq.gz.
Time elapsed:5126075 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202445’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 10073153142 Mar 30 16:35 ERX202445.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1174674324 Mar 30 16:35 ERX202445.sum.gz
ERX202445.sum.gz was set to analysis list.
Analyzing ERX202445.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5904 Mar 30 16:51 ERX202445.mapsum.html
Processing "ERX202445.bisulalign.gz" (10073153142 bytes)
****************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 16:57 ERX202445.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      551249 Mar 30 17:04 ERX202445.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202445.graph
Output File (methyl)    :ERX202445.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202445.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202445.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   228405400 Mar 30 17:17 ERX202445.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   104623448 Mar 30 17:17 ERX202445.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   258246811 Mar 30 17:17 ERX202445.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    769405 Mar 30 18:00 ERX202445.hmr
-rw-r--r-- 1 okishinya so-ddmku     42960 Mar 30 18:00 ERX202445.pmd
-rw-r--r-- 1 okishinya so-ddmku   8455186 Mar 30 18:00 ERX202445.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 158649621 Mar 30 18:04 ERX202445.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 151186490 Mar 30 18:02 ERX202445.cpg.methyl.bw

=-=-=num_reads	56831819
=-=-=mapping_rate_1	0.979
=-=-=mapping_rate_2	0.979
=-=-=methyl_rate_cpg_total	0.631
=-=-=methyl_rate_cpg_lambda	0.23
=-=-=low_methyl_region	32119
=-=-=partial_methyl_region	1795
=-=-=high_methyl_region	354888
=-=-=coverage	3.41131
=-=-=end	210330_18:04:44
=-=-=duration	3.170