Job ID = 12237405
SRX = ERX202444
Genome = rm6
Started at	210330_16:33:25

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 95680524 spots for ERR227785/ERR227785.sra
Written 95680524 spots for ERR227785/ERR227785.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 8735591259 Mar 30 16:45 ERR227785_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 8122071619 Mar 30 16:45 ERR227785_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202444.sum.gz
 output alignment file  :ERX202444.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 55658 ms)
 -FM-Index for g2a genome.... finished (elapsed: 114277 ms)
 -suffix array for c2t genome.... finished (elapsed: 144748 ms)
 -suffix array for g2a genome.... finished (elapsed: 177602 ms)
 -reference sequence.... finished (elapsed: 181027 ms)
Index loading finished.
File(s) loaded: ERR227785_1.fastq.gz, ERR227785_2.fastq.gz.
Time elapsed:8263656 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202444’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 17002874320 Mar 30 19:17 ERX202444.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1979334590 Mar 30 19:17 ERX202444.sum.gz
ERX202444.sum.gz was set to analysis list.
Analyzing ERX202444.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6010 Mar 30 19:45 ERX202444.mapsum.html
Processing "ERX202444.bisulalign.gz" (17002874320 bytes)
***************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 19:54 ERX202444.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      553586 Mar 30 20:01 ERX202444.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202444.graph
Output File (methyl)    :ERX202444.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202444.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202444.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   231192443 Mar 30 20:15 ERX202444.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   132011724 Mar 30 20:15 ERX202444.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   268271173 Mar 30 20:15 ERX202444.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    856936 Mar 30 21:06 ERX202444.hmr
-rw-r--r-- 1 okishinya so-ddmku     50868 Mar 30 21:06 ERX202444.pmd
-rw-r--r-- 1 okishinya so-ddmku   7349977 Mar 30 21:06 ERX202444.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 189202011 Mar 30 21:11 ERX202444.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 183887132 Mar 30 21:08 ERX202444.cpg.methyl.bw

=-=-=num_reads	95680523
=-=-=mapping_rate_1	0.981
=-=-=mapping_rate_2	0.98
=-=-=methyl_rate_cpg_total	0.663
=-=-=methyl_rate_cpg_lambda	0.208
=-=-=low_methyl_region	35766
=-=-=partial_methyl_region	2115
=-=-=high_methyl_region	308490
=-=-=coverage	5.28298
=-=-=end	210330_21:11:24
=-=-=duration	4.633