Job ID = 12237351
SRX = ERX202443
Genome = rm6
Started at	210330_14:55:40

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 60091663 spots for ERR227784/ERR227784.sra
Written 60091663 spots for ERR227784/ERR227784.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 5011104230 Mar 30 15:02 ERR227784_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 4441194972 Mar 30 15:02 ERR227784_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202443.sum.gz
 output alignment file  :ERX202443.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 32027 ms)
 -FM-Index for g2a genome.... finished (elapsed: 63860 ms)
 -suffix array for c2t genome.... finished (elapsed: 78441 ms)
 -suffix array for g2a genome.... finished (elapsed: 94568 ms)
 -reference sequence.... finished (elapsed: 96013 ms)
Index loading finished.
File(s) loaded: ERR227784_1.fastq.gz, ERR227784_2.fastq.gz.
Time elapsed:7805957 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202443’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 10657008144 Mar 30 17:19 ERX202443.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1242551987 Mar 30 17:19 ERX202443.sum.gz
ERX202443.sum.gz was set to analysis list.
Analyzing ERX202443.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6141 Mar 30 17:33 ERX202443.mapsum.html
Processing "ERX202443.bisulalign.gz" (10657008144 bytes)
********************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:38 ERX202443.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      551275 Mar 30 17:44 ERX202443.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202443.graph
Output File (methyl)    :ERX202443.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202443.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202443.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   228668806 Mar 30 17:56 ERX202443.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   108953660 Mar 30 17:56 ERX202443.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   259671436 Mar 30 17:56 ERX202443.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    802204 Mar 30 18:31 ERX202443.hmr
-rw-r--r-- 1 okishinya so-ddmku     44113 Mar 30 18:31 ERX202443.pmd
-rw-r--r-- 1 okishinya so-ddmku   8269785 Mar 30 18:31 ERX202443.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 164353959 Mar 30 18:35 ERX202443.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 156954061 Mar 30 18:33 ERX202443.cpg.methyl.bw

=-=-=num_reads	60091662
=-=-=mapping_rate_1	0.98
=-=-=mapping_rate_2	0.979
=-=-=methyl_rate_cpg_total	0.642
=-=-=methyl_rate_cpg_lambda	0.21
=-=-=low_methyl_region	33483
=-=-=partial_methyl_region	1840
=-=-=high_methyl_region	347099
=-=-=coverage	3.37103
=-=-=end	210330_18:35:42
=-=-=duration	3.667