Job ID = 12237334
SRX = ERX202442
Genome = rm6
Started at	210330_14:53:14

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 55211849 spots for ERR227783/ERR227783.sra
Written 55211849 spots for ERR227783/ERR227783.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 4602030618 Mar 30 14:59 ERR227783_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3998484102 Mar 30 14:59 ERR227783_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202442.sum.gz
 output alignment file  :ERX202442.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 31576 ms)
 -FM-Index for g2a genome.... finished (elapsed: 63650 ms)
 -suffix array for c2t genome.... finished (elapsed: 77504 ms)
 -suffix array for g2a genome.... finished (elapsed: 90061 ms)
 -reference sequence.... finished (elapsed: 90916 ms)
Index loading finished.
File(s) loaded: ERR227783_1.fastq.gz, ERR227783_2.fastq.gz.
Time elapsed:6804181 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202442’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 9800618422 Mar 30 16:58 ERX202442.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 1142352484 Mar 30 16:58 ERX202442.sum.gz
ERX202442.sum.gz was set to analysis list.
Analyzing ERX202442.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       5916 Mar 30 17:12 ERX202442.mapsum.html
Processing "ERX202442.bisulalign.gz" (9800618422 bytes)
******************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:18 ERX202442.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      551196 Mar 30 17:24 ERX202442.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202442.graph
Output File (methyl)    :ERX202442.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202442.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202442.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   228259767 Mar 30 17:37 ERX202442.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   104805476 Mar 30 17:37 ERX202442.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   258275389 Mar 30 17:37 ERX202442.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    795656 Mar 30 18:16 ERX202442.hmr
-rw-r--r-- 1 okishinya so-ddmku     43360 Mar 30 18:16 ERX202442.pmd
-rw-r--r-- 1 okishinya so-ddmku   8468236 Mar 30 18:16 ERX202442.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 159542647 Mar 30 18:20 ERX202442.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 151895123 Mar 30 18:18 ERX202442.cpg.methyl.bw

=-=-=num_reads	55211847
=-=-=mapping_rate_1	0.98
=-=-=mapping_rate_2	0.979
=-=-=methyl_rate_cpg_total	0.637
=-=-=methyl_rate_cpg_lambda	0.212
=-=-=low_methyl_region	33210
=-=-=partial_methyl_region	1812
=-=-=high_methyl_region	355417
=-=-=coverage	3.12113
=-=-=end	210330_18:20:38
=-=-=duration	3.456