Job ID = 12237289
SRX = ERX202441
Genome = rm6
Started at	210330_14:51:14

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 32486082 spots for ERR227782/ERR227782.sra
Written 32486082 spots for ERR227782/ERR227782.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2774646272 Mar 30 14:55 ERR227782_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2251944600 Mar 30 14:55 ERR227782_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202441.sum.gz
 output alignment file  :ERX202441.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 51764 ms)
 -FM-Index for g2a genome.... finished (elapsed: 106302 ms)
 -suffix array for c2t genome.... finished (elapsed: 116300 ms)
 -suffix array for g2a genome.... finished (elapsed: 126185 ms)
 -reference sequence.... finished (elapsed: 126575 ms)
Index loading finished.
File(s) loaded: ERR227782_1.fastq.gz, ERR227782_2.fastq.gz.
Time elapsed:2982808 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202441’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 5138747655 Mar 30 15:49 ERX202441.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  632379029 Mar 30 15:49 ERX202441.sum.gz
ERX202441.sum.gz was set to analysis list.
Analyzing ERX202441.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       5667 Mar 30 15:58 ERX202441.mapsum.html
Processing "ERX202441.bisulalign.gz" (5138747655 bytes)
***********************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 16:02 ERX202441.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555090 Mar 30 16:09 ERX202441.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202441.graph
Output File (methyl)    :ERX202441.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202441.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202441.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224819359 Mar 30 16:22 ERX202441.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    66681900 Mar 30 16:22 ERX202441.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   244901516 Mar 30 16:22 ERX202441.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    593512 Mar 30 16:46 ERX202441.hmr
-rw-r--r-- 1 okishinya so-ddmku     21600 Mar 30 16:46 ERX202441.pmd
-rw-r--r-- 1 okishinya so-ddmku   9059136 Mar 30 16:46 ERX202441.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 111185044 Mar 30 16:49 ERX202441.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 100623242 Mar 30 16:47 ERX202441.cpg.methyl.bw

=-=-=num_reads	32486082
=-=-=mapping_rate_1	0.891
=-=-=mapping_rate_2	0.884
=-=-=methyl_rate_cpg_total	0.563
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	24786
=-=-=partial_methyl_region	904
=-=-=high_methyl_region	377799
=-=-=coverage	1.76115
=-=-=end	210330_16:49:40
=-=-=duration	1.973