Job ID = 12237363
SRX = ERX202440
Genome = rm6
Started at	210330_14:58:13

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 67197907 spots for ERR227781/ERR227781.sra
Written 67197907 spots for ERR227781/ERR227781.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 5690783623 Mar 30 15:05 ERR227781_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 4891165360 Mar 30 15:05 ERR227781_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202440.sum.gz
 output alignment file  :ERX202440.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 29163 ms)
 -FM-Index for g2a genome.... finished (elapsed: 58065 ms)
 -suffix array for c2t genome.... finished (elapsed: 70127 ms)
 -suffix array for g2a genome.... finished (elapsed: 81726 ms)
 -reference sequence.... finished (elapsed: 82515 ms)
Index loading finished.
File(s) loaded: ERR227781_1.fastq.gz, ERR227781_2.fastq.gz.
Time elapsed:7363227 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202440’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 10686439895 Mar 30 17:15 ERX202440.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1296096019 Mar 30 17:15 ERX202440.sum.gz
ERX202440.sum.gz was set to analysis list.
Analyzing ERX202440.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6184 Mar 30 17:28 ERX202440.mapsum.html
Processing "ERX202440.bisulalign.gz" (10686439895 bytes)
*****: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:34 ERX202440.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      561360 Mar 30 17:39 ERX202440.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202440.graph
Output File (methyl)    :ERX202440.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202440.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202440.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   228208589 Mar 30 17:51 ERX202440.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    85840218 Mar 30 17:51 ERX202440.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   255026424 Mar 30 17:51 ERX202440.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    660000 Mar 30 18:14 ERX202440.hmr
-rw-r--r-- 1 okishinya so-ddmku     24582 Mar 30 18:14 ERX202440.pmd
-rw-r--r-- 1 okishinya so-ddmku   9340095 Mar 30 18:14 ERX202440.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 133962122 Mar 30 18:17 ERX202440.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 125520036 Mar 30 18:16 ERX202440.cpg.methyl.bw

=-=-=num_reads	67197906
=-=-=mapping_rate_1	0.894
=-=-=mapping_rate_2	0.879
=-=-=methyl_rate_cpg_total	0.606
=-=-=methyl_rate_cpg_lambda	0
=-=-=low_methyl_region	27555
=-=-=partial_methyl_region	1029
=-=-=high_methyl_region	389414
=-=-=coverage	3.57709
=-=-=end	210330_18:17:55
=-=-=duration	3.328