Job ID = 12237288
SRX = ERX202439
Genome = rm6
Started at	210330_14:51:14

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 32455527 spots for ERR227780/ERR227780.sra
Written 32455527 spots for ERR227780/ERR227780.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2605667634 Mar 30 14:55 ERR227780_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2109702731 Mar 30 14:55 ERR227780_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202439.sum.gz
 output alignment file  :ERX202439.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 52948 ms)
 -FM-Index for g2a genome.... finished (elapsed: 108602 ms)
 -suffix array for c2t genome.... finished (elapsed: 127045 ms)
 -suffix array for g2a genome.... finished (elapsed: 150236 ms)
 -reference sequence.... finished (elapsed: 151652 ms)
Index loading finished.
File(s) loaded: ERR227780_1.fastq.gz, ERR227780_2.fastq.gz.
Time elapsed:2947083 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202439’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 5133913675 Mar 30 15:48 ERX202439.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  632735035 Mar 30 15:48 ERX202439.sum.gz
ERX202439.sum.gz was set to analysis list.
Analyzing ERX202439.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       5648 Mar 30 15:57 ERX202439.mapsum.html
Processing "ERX202439.bisulalign.gz" (5133913675 bytes)
***: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 16:01 ERX202439.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555118 Mar 30 16:08 ERX202439.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202439.graph
Output File (methyl)    :ERX202439.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202439.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202439.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224777336 Mar 30 16:21 ERX202439.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    65417976 Mar 30 16:21 ERX202439.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   244749239 Mar 30 16:21 ERX202439.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    586283 Mar 30 16:44 ERX202439.hmr
-rw-r--r-- 1 okishinya so-ddmku     21570 Mar 30 16:44 ERX202439.pmd
-rw-r--r-- 1 okishinya so-ddmku   8905776 Mar 30 16:44 ERX202439.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 108987851 Mar 30 16:48 ERX202439.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  98579228 Mar 30 16:46 ERX202439.cpg.methyl.bw

=-=-=num_reads	32455524
=-=-=mapping_rate_1	0.889
=-=-=mapping_rate_2	0.877
=-=-=methyl_rate_cpg_total	0.565
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	24481
=-=-=partial_methyl_region	903
=-=-=high_methyl_region	371445
=-=-=coverage	1.74103
=-=-=end	210330_16:48:10
=-=-=duration	1.948