Job ID = 12237321
SRX = ERX202438
Genome = rm6
Started at	210330_14:51:29

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 48519464 spots for ERR227779/ERR227779.sra
Written 48519464 spots for ERR227779/ERR227779.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 4043135891 Mar 30 14:58 ERR227779_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3312570439 Mar 30 14:58 ERR227779_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202438.sum.gz
 output alignment file  :ERX202438.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 35072 ms)
 -FM-Index for g2a genome.... finished (elapsed: 70766 ms)
 -suffix array for c2t genome.... finished (elapsed: 81371 ms)
 -suffix array for g2a genome.... finished (elapsed: 91427 ms)
 -reference sequence.... finished (elapsed: 91826 ms)
Index loading finished.
File(s) loaded: ERR227779_1.fastq.gz, ERR227779_2.fastq.gz.
Time elapsed:6560829 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202438’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 7737316226 Mar 30 16:55 ERX202438.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  950548617 Mar 30 16:55 ERX202438.sum.gz
ERX202438.sum.gz was set to analysis list.
Analyzing ERX202438.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       5990 Mar 30 17:09 ERX202438.mapsum.html
Processing "ERX202438.bisulalign.gz" (7737316226 bytes)
**************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:15 ERX202438.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      559221 Mar 30 17:23 ERX202438.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202438.graph
Output File (methyl)    :ERX202438.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202438.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202438.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   226625545 Mar 30 17:38 ERX202438.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    76089504 Mar 30 17:38 ERX202438.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   250228073 Mar 30 17:38 ERX202438.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    636827 Mar 30 18:08 ERX202438.hmr
-rw-r--r-- 1 okishinya so-ddmku     23836 Mar 30 18:08 ERX202438.pmd
-rw-r--r-- 1 okishinya so-ddmku   9166839 Mar 30 18:08 ERX202438.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 122285464 Mar 30 18:12 ERX202438.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 112891914 Mar 30 18:10 ERX202438.cpg.methyl.bw

=-=-=num_reads	48519461
=-=-=mapping_rate_1	0.887
=-=-=mapping_rate_2	0.886
=-=-=methyl_rate_cpg_total	0.588
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	26587
=-=-=partial_methyl_region	997
=-=-=high_methyl_region	382276
=-=-=coverage	2.61584
=-=-=end	210330_18:12:29
=-=-=duration	3.350