Job ID = 12237324
SRX = ERX202437
Genome = rm6
Started at	210330_14:51:44

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 49614586 spots for ERR227778/ERR227778.sra
Written 49614586 spots for ERR227778/ERR227778.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 4249728082 Mar 30 14:59 ERR227778_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3563625790 Mar 30 14:59 ERR227778_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202437.sum.gz
 output alignment file  :ERX202437.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 37096 ms)
 -FM-Index for g2a genome.... finished (elapsed: 73795 ms)
 -suffix array for c2t genome.... finished (elapsed: 90507 ms)
 -suffix array for g2a genome.... finished (elapsed: 107263 ms)
 -reference sequence.... finished (elapsed: 108530 ms)
Index loading finished.
File(s) loaded: ERR227778_1.fastq.gz, ERR227778_2.fastq.gz.
Time elapsed:5978013 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202437’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 7074678211 Mar 30 16:46 ERX202437.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  935609508 Mar 30 16:46 ERX202437.sum.gz
ERX202437.sum.gz was set to analysis list.
Analyzing ERX202437.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6015 Mar 30 16:59 ERX202437.mapsum.html
Processing "ERX202437.bisulalign.gz" (7074678211 bytes)
*: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:05 ERX202437.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557109 Mar 30 17:13 ERX202437.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202437.graph
Output File (methyl)    :ERX202437.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202437.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202437.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   225090936 Mar 30 17:28 ERX202437.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    62703803 Mar 30 17:28 ERX202437.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   243274324 Mar 30 17:28 ERX202437.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    517957 Mar 30 17:55 ERX202437.hmr
-rw-r--r-- 1 okishinya so-ddmku     20441 Mar 30 17:55 ERX202437.pmd
-rw-r--r-- 1 okishinya so-ddmku   9702964 Mar 30 17:55 ERX202437.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 106510168 Mar 30 17:58 ERX202437.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  74439018 Mar 30 17:57 ERX202437.cpg.methyl.bw

=-=-=num_reads	49614585
=-=-=mapping_rate_1	0.853
=-=-=mapping_rate_2	0.833
=-=-=methyl_rate_cpg_total	0.53
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	21638
=-=-=partial_methyl_region	857
=-=-=high_methyl_region	404793
=-=-=coverage	2.8825
=-=-=end	210330_17:59:08
=-=-=duration	3.123