Job ID = 12237318
SRX = ERX202436
Genome = rm6
Started at	210330_14:51:29

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 47699888 spots for ERR227777/ERR227777.sra
Written 47699888 spots for ERR227777/ERR227777.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 3929576713 Mar 30 14:58 ERR227777_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3244115165 Mar 30 14:58 ERR227777_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202436.sum.gz
 output alignment file  :ERX202436.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 36948 ms)
 -FM-Index for g2a genome.... finished (elapsed: 73363 ms)
 -suffix array for c2t genome.... finished (elapsed: 88211 ms)
 -suffix array for g2a genome.... finished (elapsed: 106076 ms)
 -reference sequence.... finished (elapsed: 107287 ms)
Index loading finished.
File(s) loaded: ERR227777_1.fastq.gz, ERR227777_2.fastq.gz.
Time elapsed:7057926 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202436’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 6635450258 Mar 30 17:03 ERX202436.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  878976754 Mar 30 17:03 ERX202436.sum.gz
ERX202436.sum.gz was set to analysis list.
Analyzing ERX202436.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       5852 Mar 30 17:15 ERX202436.mapsum.html
Processing "ERX202436.bisulalign.gz" (6635450258 bytes)
***************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:21 ERX202436.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557122 Mar 30 17:30 ERX202436.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202436.graph
Output File (methyl)    :ERX202436.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202436.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202436.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224760196 Mar 30 17:46 ERX202436.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    63220250 Mar 30 17:46 ERX202436.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   243157994 Mar 30 17:46 ERX202436.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    517024 Mar 30 18:13 ERX202436.hmr
-rw-r--r-- 1 okishinya so-ddmku     18910 Mar 30 18:13 ERX202436.pmd
-rw-r--r-- 1 okishinya so-ddmku   9607741 Mar 30 18:13 ERX202436.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 106930511 Mar 30 18:17 ERX202436.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  97712348 Mar 30 18:15 ERX202436.cpg.methyl.bw

=-=-=num_reads	47699888
=-=-=mapping_rate_1	0.84
=-=-=mapping_rate_2	0.823
=-=-=methyl_rate_cpg_total	0.535
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	21596
=-=-=partial_methyl_region	790
=-=-=high_methyl_region	400861
=-=-=coverage	2.54439
=-=-=end	210330_18:17:57
=-=-=duration	3.441