Job ID = 12237305
SRX = ERX202435
Genome = rm6
Started at	210330_14:51:14

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 40044163 spots for ERR227776/ERR227776.sra
Written 40044163 spots for ERR227776/ERR227776.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 3223021209 Mar 30 14:57 ERR227776_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2710602612 Mar 30 14:57 ERR227776_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202435.sum.gz
 output alignment file  :ERX202435.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 35453 ms)
 -FM-Index for g2a genome.... finished (elapsed: 70572 ms)
 -suffix array for c2t genome.... finished (elapsed: 79907 ms)
 -suffix array for g2a genome.... finished (elapsed: 89891 ms)
 -reference sequence.... finished (elapsed: 90164 ms)
Index loading finished.
File(s) loaded: ERR227776_1.fastq.gz, ERR227776_2.fastq.gz.
Time elapsed:4633466 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202435’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 5536519533 Mar 30 16:19 ERX202435.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  751053307 Mar 30 16:19 ERX202435.sum.gz
ERX202435.sum.gz was set to analysis list.
Analyzing ERX202435.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6111 Mar 30 16:29 ERX202435.mapsum.html
Processing "ERX202435.bisulalign.gz" (5536519533 bytes)
*******************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 16:35 ERX202435.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555032 Mar 30 16:43 ERX202435.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202435.graph
Output File (methyl)    :ERX202435.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202435.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202435.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224235667 Mar 30 16:58 ERX202435.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    58887428 Mar 30 16:58 ERX202435.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   241394729 Mar 30 16:58 ERX202435.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    505778 Mar 30 17:23 ERX202435.hmr
-rw-r--r-- 1 okishinya so-ddmku     18289 Mar 30 17:23 ERX202435.pmd
-rw-r--r-- 1 okishinya so-ddmku   9574008 Mar 30 17:23 ERX202435.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 101388028 Mar 30 17:28 ERX202435.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  71069935 Mar 30 17:26 ERX202435.cpg.methyl.bw

=-=-=num_reads	40044162
=-=-=mapping_rate_1	0.838
=-=-=mapping_rate_2	0.822
=-=-=methyl_rate_cpg_total	0.521
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	21132
=-=-=partial_methyl_region	766
=-=-=high_methyl_region	399447
=-=-=coverage	2.08464
=-=-=end	210330_17:28:13
=-=-=duration	2.616