Job ID = 12237328
SRX = ERX202434
Genome = rm6
Started at	210330_14:51:44

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 51135967 spots for ERR227775/ERR227775.sra
Written 51135967 spots for ERR227775/ERR227775.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 4255593740 Mar 30 14:59 ERR227775_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3578001377 Mar 30 14:59 ERR227775_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202434.sum.gz
 output alignment file  :ERX202434.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 34956 ms)
 -FM-Index for g2a genome.... finished (elapsed: 70861 ms)
 -suffix array for c2t genome.... finished (elapsed: 80166 ms)
 -suffix array for g2a genome.... finished (elapsed: 89240 ms)
 -reference sequence.... finished (elapsed: 89574 ms)
Index loading finished.
File(s) loaded: ERR227775_1.fastq.gz, ERR227775_2.fastq.gz.
Time elapsed:5407832 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202434’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 7194549788 Mar 30 16:36 ERX202434.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  967517845 Mar 30 16:36 ERX202434.sum.gz
ERX202434.sum.gz was set to analysis list.
Analyzing ERX202434.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6036 Mar 30 16:49 ERX202434.mapsum.html
Processing "ERX202434.bisulalign.gz" (7194549788 bytes)
****************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 16:56 ERX202434.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557101 Mar 30 17:03 ERX202434.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202434.graph
Output File (methyl)    :ERX202434.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202434.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202434.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224984403 Mar 30 17:19 ERX202434.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    65032496 Mar 30 17:19 ERX202434.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   243926321 Mar 30 17:19 ERX202434.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    526279 Mar 30 17:46 ERX202434.hmr
-rw-r--r-- 1 okishinya so-ddmku     19210 Mar 30 17:46 ERX202434.pmd
-rw-r--r-- 1 okishinya so-ddmku   9687549 Mar 30 17:46 ERX202434.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 109529753 Mar 30 17:50 ERX202434.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 100198358 Mar 30 17:48 ERX202434.cpg.methyl.bw

=-=-=num_reads	51135966
=-=-=mapping_rate_1	0.844
=-=-=mapping_rate_2	0.834
=-=-=methyl_rate_cpg_total	0.537
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	21983
=-=-=partial_methyl_region	804
=-=-=high_methyl_region	404204
=-=-=coverage	2.68744
=-=-=end	210330_17:51:02
=-=-=duration	2.988