Job ID = 12237357
SRX = ERX202433
Genome = rm6
Started at	210330_14:56:35

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 63884894 spots for ERR227774/ERR227774.sra
Written 63884894 spots for ERR227774/ERR227774.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 5076843741 Mar 30 15:03 ERR227774_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 4307960015 Mar 30 15:03 ERR227774_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202433.sum.gz
 output alignment file  :ERX202433.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 30088 ms)
 -FM-Index for g2a genome.... finished (elapsed: 59250 ms)
 -suffix array for c2t genome.... finished (elapsed: 67995 ms)
 -suffix array for g2a genome.... finished (elapsed: 75965 ms)
 -reference sequence.... finished (elapsed: 76259 ms)
Index loading finished.
File(s) loaded: ERR227774_1.fastq.gz, ERR227774_2.fastq.gz.
Time elapsed:7422898 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202433’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 8849652064 Mar 30 17:13 ERX202433.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 1194574070 Mar 30 17:13 ERX202433.sum.gz
ERX202433.sum.gz was set to analysis list.
Analyzing ERX202433.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6036 Mar 30 17:24 ERX202433.mapsum.html
Processing "ERX202433.bisulalign.gz" (8849652064 bytes)
************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:30 ERX202433.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      561153 Mar 30 17:36 ERX202433.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202433.graph
Output File (methyl)    :ERX202433.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202433.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202433.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   225815677 Mar 30 17:47 ERX202433.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    74857765 Mar 30 17:47 ERX202433.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   247071172 Mar 30 17:47 ERX202433.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    561662 Mar 30 18:09 ERX202433.hmr
-rw-r--r-- 1 okishinya so-ddmku     22218 Mar 30 18:09 ERX202433.pmd
-rw-r--r-- 1 okishinya so-ddmku   9610456 Mar 30 18:09 ERX202433.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 122229108 Mar 30 18:12 ERX202433.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 112850478 Mar 30 18:10 ERX202433.cpg.methyl.bw

=-=-=num_reads	63884892
=-=-=mapping_rate_1	0.843
=-=-=mapping_rate_2	0.838
=-=-=methyl_rate_cpg_total	0.562
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	23461
=-=-=partial_methyl_region	930
=-=-=high_methyl_region	400830
=-=-=coverage	3.46004
=-=-=end	210330_18:12:22
=-=-=duration	3.263