Job ID = 12237314
SRX = ERX202432
Genome = rm6
Started at	210330_14:51:29

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 45986476 spots for ERR227773/ERR227773.sra
Written 45986476 spots for ERR227773/ERR227773.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 3816967332 Mar 30 14:58 ERR227773_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3124352012 Mar 30 14:58 ERR227773_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202432.sum.gz
 output alignment file  :ERX202432.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 36629 ms)
 -FM-Index for g2a genome.... finished (elapsed: 73148 ms)
 -suffix array for c2t genome.... finished (elapsed: 88853 ms)
 -suffix array for g2a genome.... finished (elapsed: 105440 ms)
 -reference sequence.... finished (elapsed: 106813 ms)
Index loading finished.
File(s) loaded: ERR227773_1.fastq.gz, ERR227773_2.fastq.gz.
Time elapsed:6957595 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202432’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 6310049927 Mar 30 17:00 ERX202432.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  852060073 Mar 30 17:00 ERX202432.sum.gz
ERX202432.sum.gz was set to analysis list.
Analyzing ERX202432.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6198 Mar 30 17:11 ERX202432.mapsum.html
Processing "ERX202432.bisulalign.gz" (6310049927 bytes)
******************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:17 ERX202432.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557018 Mar 30 17:25 ERX202432.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202432.graph
Output File (methyl)    :ERX202432.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202432.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202432.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224714642 Mar 30 17:40 ERX202432.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    62888475 Mar 30 17:40 ERX202432.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   243148691 Mar 30 17:40 ERX202432.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    522394 Mar 30 18:07 ERX202432.hmr
-rw-r--r-- 1 okishinya so-ddmku     19357 Mar 30 18:07 ERX202432.pmd
-rw-r--r-- 1 okishinya so-ddmku   9589541 Mar 30 18:07 ERX202432.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 106409102 Mar 30 18:10 ERX202432.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  97338404 Mar 30 18:09 ERX202432.cpg.methyl.bw

=-=-=num_reads	45986473
=-=-=mapping_rate_1	0.845
=-=-=mapping_rate_2	0.83
=-=-=methyl_rate_cpg_total	0.542
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	21825
=-=-=partial_methyl_region	811
=-=-=high_methyl_region	400062
=-=-=coverage	2.43713
=-=-=end	210330_18:11:07
=-=-=duration	3.327