Job ID = 12237319
SRX = ERX202431
Genome = rm6
Started at	210330_14:51:29

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 48171552 spots for ERR227772/ERR227772.sra
Written 48171552 spots for ERR227772/ERR227772.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 3944871075 Mar 30 14:58 ERR227772_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3354550120 Mar 30 14:58 ERR227772_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202431.sum.gz
 output alignment file  :ERX202431.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 36012 ms)
 -FM-Index for g2a genome.... finished (elapsed: 72283 ms)
 -suffix array for c2t genome.... finished (elapsed: 88740 ms)
 -suffix array for g2a genome.... finished (elapsed: 105586 ms)
 -reference sequence.... finished (elapsed: 107230 ms)
Index loading finished.
File(s) loaded: ERR227772_1.fastq.gz, ERR227772_2.fastq.gz.
Time elapsed:5381262 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202431’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 6574786521 Mar 30 16:34 ERX202431.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  909520568 Mar 30 16:34 ERX202431.sum.gz
ERX202431.sum.gz was set to analysis list.
Analyzing ERX202431.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6164 Mar 30 16:46 ERX202431.mapsum.html
Processing "ERX202431.bisulalign.gz" (6574786521 bytes)
****************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 16:53 ERX202431.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557059 Mar 30 17:01 ERX202431.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202431.graph
Output File (methyl)    :ERX202431.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202431.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202431.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224861477 Mar 30 17:16 ERX202431.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    65719434 Mar 30 17:16 ERX202431.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   243895047 Mar 30 17:16 ERX202431.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    531852 Mar 30 17:44 ERX202431.hmr
-rw-r--r-- 1 okishinya so-ddmku     19003 Mar 30 17:44 ERX202431.pmd
-rw-r--r-- 1 okishinya so-ddmku   9629812 Mar 30 17:44 ERX202431.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 110680773 Mar 30 17:48 ERX202431.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 101302512 Mar 30 17:46 ERX202431.cpg.methyl.bw

=-=-=num_reads	48171551
=-=-=mapping_rate_1	0.846
=-=-=mapping_rate_2	0.825
=-=-=methyl_rate_cpg_total	0.545
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	22221
=-=-=partial_methyl_region	796
=-=-=high_methyl_region	401729
=-=-=coverage	2.46025
=-=-=end	210330_17:48:37
=-=-=duration	2.952