Job ID = 12237309
SRX = ERX202430
Genome = rm6
Started at	210330_14:51:29

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 44553076 spots for ERR227771/ERR227771.sra
Written 44553076 spots for ERR227771/ERR227771.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 3688977097 Mar 30 14:58 ERR227771_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3029702745 Mar 30 14:58 ERR227771_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202430.sum.gz
 output alignment file  :ERX202430.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 35248 ms)
 -FM-Index for g2a genome.... finished (elapsed: 70481 ms)
 -suffix array for c2t genome.... finished (elapsed: 86797 ms)
 -suffix array for g2a genome.... finished (elapsed: 103304 ms)
 -reference sequence.... finished (elapsed: 104718 ms)
Index loading finished.
File(s) loaded: ERR227771_1.fastq.gz, ERR227771_2.fastq.gz.
Time elapsed:4466149 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202430’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 6142246562 Mar 30 16:18 ERX202430.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  842953162 Mar 30 16:18 ERX202430.sum.gz
ERX202430.sum.gz was set to analysis list.
Analyzing ERX202430.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6105 Mar 30 16:29 ERX202430.mapsum.html
Processing "ERX202430.bisulalign.gz" (6142246562 bytes)
********************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 16:35 ERX202430.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557051 Mar 30 16:43 ERX202430.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202430.graph
Output File (methyl)    :ERX202430.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202430.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202430.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224599365 Mar 30 16:58 ERX202430.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    61581489 Mar 30 16:58 ERX202430.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   242804796 Mar 30 16:58 ERX202430.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    521736 Mar 30 17:24 ERX202430.hmr
-rw-r--r-- 1 okishinya so-ddmku     18313 Mar 30 17:24 ERX202430.pmd
-rw-r--r-- 1 okishinya so-ddmku   9559033 Mar 30 17:24 ERX202430.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 104528858 Mar 30 17:28 ERX202430.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  95528283 Mar 30 17:26 ERX202430.cpg.methyl.bw

=-=-=num_reads	44553075
=-=-=mapping_rate_1	0.843
=-=-=mapping_rate_2	0.836
=-=-=methyl_rate_cpg_total	0.537
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	21798
=-=-=partial_methyl_region	767
=-=-=high_methyl_region	398875
=-=-=coverage	2.35089
=-=-=end	210330_17:28:28
=-=-=duration	2.616