Job ID = 12237377
SRX = ERX202429
Genome = rm6
Started at	210330_15:02:05

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 69842251 spots for ERR227770/ERR227770.sra
Written 69842251 spots for ERR227770/ERR227770.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 5705302957 Mar 30 15:11 ERR227770_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 4776036328 Mar 30 15:11 ERR227770_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202429.sum.gz
 output alignment file  :ERX202429.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 32843 ms)
 -FM-Index for g2a genome.... finished (elapsed: 65661 ms)
 -suffix array for c2t genome.... finished (elapsed: 74383 ms)
 -suffix array for g2a genome.... finished (elapsed: 82708 ms)
 -reference sequence.... finished (elapsed: 83020 ms)
Index loading finished.
File(s) loaded: ERR227770_1.fastq.gz, ERR227770_2.fastq.gz.
Time elapsed:8258784 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202429’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 10704881626 Mar 30 17:37 ERX202429.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1347017751 Mar 30 17:37 ERX202429.sum.gz
ERX202429.sum.gz was set to analysis list.
Analyzing ERX202429.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5962 Mar 30 17:52 ERX202429.mapsum.html
Processing "ERX202429.bisulalign.gz" (10704881626 bytes)
**************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:59 ERX202429.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      563254 Mar 30 18:05 ERX202429.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202429.graph
Output File (methyl)    :ERX202429.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202429.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202429.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   227653823 Mar 30 18:17 ERX202429.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    84668283 Mar 30 18:17 ERX202429.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   253344927 Mar 30 18:17 ERX202429.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    620927 Mar 30 18:43 ERX202429.hmr
-rw-r--r-- 1 okishinya so-ddmku     27861 Mar 30 18:43 ERX202429.pmd
-rw-r--r-- 1 okishinya so-ddmku   9588413 Mar 30 18:43 ERX202429.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 133379224 Mar 30 18:46 ERX202429.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 125062354 Mar 30 18:44 ERX202429.cpg.methyl.bw

=-=-=num_reads	69842250
=-=-=mapping_rate_1	0.882
=-=-=mapping_rate_2	0.878
=-=-=methyl_rate_cpg_total	0.601
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	25928
=-=-=partial_methyl_region	1167
=-=-=high_methyl_region	399834
=-=-=coverage	3.81994
=-=-=end	210330_18:46:33
=-=-=duration	3.740