Job ID = 12237349
SRX = ERX202428
Genome = rm6
Started at	210330_14:55:40

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 59370193 spots for ERR227769/ERR227769.sra
Written 59370193 spots for ERR227769/ERR227769.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 5028162751 Mar 30 15:02 ERR227769_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 4196469485 Mar 30 15:02 ERR227769_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202428.sum.gz
 output alignment file  :ERX202428.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 30058 ms)
 -FM-Index for g2a genome.... finished (elapsed: 59604 ms)
 -suffix array for c2t genome.... finished (elapsed: 72063 ms)
 -suffix array for g2a genome.... finished (elapsed: 84107 ms)
 -reference sequence.... finished (elapsed: 85014 ms)
Index loading finished.
File(s) loaded: ERR227769_1.fastq.gz, ERR227769_2.fastq.gz.
Time elapsed:6468050 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202428’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 9021409769 Mar 30 16:56 ERX202428.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 1134461826 Mar 30 16:56 ERX202428.sum.gz
ERX202428.sum.gz was set to analysis list.
Analyzing ERX202428.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6109 Mar 30 17:07 ERX202428.mapsum.html
Processing "ERX202428.bisulalign.gz" (9021409769 bytes)
***********************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:13 ERX202428.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      561221 Mar 30 17:18 ERX202428.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202428.graph
Output File (methyl)    :ERX202428.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202428.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202428.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   226901662 Mar 30 17:30 ERX202428.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    77815951 Mar 30 17:30 ERX202428.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   250771102 Mar 30 17:30 ERX202428.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    596912 Mar 30 17:52 ERX202428.hmr
-rw-r--r-- 1 okishinya so-ddmku     23191 Mar 30 17:52 ERX202428.pmd
-rw-r--r-- 1 okishinya so-ddmku   9580804 Mar 30 17:52 ERX202428.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 124986147 Mar 30 17:55 ERX202428.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 116277027 Mar 30 17:53 ERX202428.cpg.methyl.bw

=-=-=num_reads	59370192
=-=-=mapping_rate_1	0.882
=-=-=mapping_rate_2	0.87
=-=-=methyl_rate_cpg_total	0.591
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	24930
=-=-=partial_methyl_region	969
=-=-=high_methyl_region	399606
=-=-=coverage	3.17976
=-=-=end	210330_17:55:38
=-=-=duration	2.999