Job ID = 12237290
SRX = ERX202427
Genome = rm6
Started at	210330_14:51:14

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 32616730 spots for ERR227768/ERR227768.sra
Written 32616730 spots for ERR227768/ERR227768.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2678460709 Mar 30 14:55 ERR227768_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2160653726 Mar 30 14:55 ERR227768_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202427.sum.gz
 output alignment file  :ERX202427.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 53550 ms)
 -FM-Index for g2a genome.... finished (elapsed: 109418 ms)
 -suffix array for c2t genome.... finished (elapsed: 122014 ms)
 -suffix array for g2a genome.... finished (elapsed: 133965 ms)
 -reference sequence.... finished (elapsed: 134384 ms)
Index loading finished.
File(s) loaded: ERR227768_1.fastq.gz, ERR227768_2.fastq.gz.
Time elapsed:3285918 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202427’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 4895612520 Mar 30 15:54 ERX202427.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  629574373 Mar 30 15:54 ERX202427.sum.gz
ERX202427.sum.gz was set to analysis list.
Analyzing ERX202427.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6065 Mar 30 16:02 ERX202427.mapsum.html
Processing "ERX202427.bisulalign.gz" (4895612520 bytes)
**************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 16:06 ERX202427.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555053 Mar 30 16:13 ERX202427.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202427.graph
Output File (methyl)    :ERX202427.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202427.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202427.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224527310 Mar 30 16:26 ERX202427.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    61172118 Mar 30 16:26 ERX202427.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   243149825 Mar 30 16:26 ERX202427.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    538593 Mar 30 16:49 ERX202427.hmr
-rw-r--r-- 1 okishinya so-ddmku     20467 Mar 30 16:49 ERX202427.pmd
-rw-r--r-- 1 okishinya so-ddmku   9257734 Mar 30 16:49 ERX202427.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 104006918 Mar 30 16:52 ERX202427.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  94303963 Mar 30 16:50 ERX202427.cpg.methyl.bw

=-=-=num_reads	32616727
=-=-=mapping_rate_1	0.876
=-=-=mapping_rate_2	0.861
=-=-=methyl_rate_cpg_total	0.555
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	22490
=-=-=partial_methyl_region	856
=-=-=high_methyl_region	386191
=-=-=coverage	1.72391
=-=-=end	210330_16:52:41
=-=-=duration	2.024