Job ID = 12237359
SRX = ERX202426
Genome = rm6
Started at	210330_14:57:28

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 65829668 spots for ERR227767/ERR227767.sra
Written 65829668 spots for ERR227767/ERR227767.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 5629958315 Mar 30 15:04 ERR227767_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 4824628768 Mar 30 15:04 ERR227767_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202426.sum.gz
 output alignment file  :ERX202426.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 31996 ms)
 -FM-Index for g2a genome.... finished (elapsed: 64122 ms)
 -suffix array for c2t genome.... finished (elapsed: 77829 ms)
 -suffix array for g2a genome.... finished (elapsed: 91111 ms)
 -reference sequence.... finished (elapsed: 91995 ms)
Index loading finished.
File(s) loaded: ERR227767_1.fastq.gz, ERR227767_2.fastq.gz.
Time elapsed:7620378 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202426’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 10018532611 Mar 30 17:18 ERX202426.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1283173755 Mar 30 17:18 ERX202426.sum.gz
ERX202426.sum.gz was set to analysis list.
Analyzing ERX202426.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6032 Mar 30 17:32 ERX202426.mapsum.html
Processing "ERX202426.bisulalign.gz" (10018532611 bytes)
*: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:38 ERX202426.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      561305 Mar 30 17:44 ERX202426.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202426.graph
Output File (methyl)    :ERX202426.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202426.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202426.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   227308072 Mar 30 17:55 ERX202426.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    81283710 Mar 30 17:55 ERX202426.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   252283847 Mar 30 17:55 ERX202426.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    606162 Mar 30 18:18 ERX202426.hmr
-rw-r--r-- 1 okishinya so-ddmku     24039 Mar 30 18:18 ERX202426.pmd
-rw-r--r-- 1 okishinya so-ddmku   9620967 Mar 30 18:18 ERX202426.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 129569252 Mar 30 18:21 ERX202426.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 120884114 Mar 30 18:19 ERX202426.cpg.methyl.bw

=-=-=num_reads	65829666
=-=-=mapping_rate_1	0.88
=-=-=mapping_rate_2	0.87
=-=-=methyl_rate_cpg_total	0.593
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	25306
=-=-=partial_methyl_region	1006
=-=-=high_methyl_region	401227
=-=-=coverage	3.45843
=-=-=end	210330_18:21:28
=-=-=duration	3.400