Job ID = 12237342
SRX = ERX202425
Genome = rm6
Started at	210330_14:54:56

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 57543801 spots for ERR227766/ERR227766.sra
Written 57543801 spots for ERR227766/ERR227766.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 4606635242 Mar 30 15:01 ERR227766_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 4063355873 Mar 30 15:01 ERR227766_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202425.sum.gz
 output alignment file  :ERX202425.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 30092 ms)
 -FM-Index for g2a genome.... finished (elapsed: 59346 ms)
 -suffix array for c2t genome.... finished (elapsed: 67244 ms)
 -suffix array for g2a genome.... finished (elapsed: 74917 ms)
 -reference sequence.... finished (elapsed: 75159 ms)
Index loading finished.
File(s) loaded: ERR227766_1.fastq.gz, ERR227766_2.fastq.gz.
Time elapsed:7111495 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202425’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 9058686511 Mar 30 17:05 ERX202425.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 1100024317 Mar 30 17:05 ERX202425.sum.gz
ERX202425.sum.gz was set to analysis list.
Analyzing ERX202425.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6276 Mar 30 17:17 ERX202425.mapsum.html
Processing "ERX202425.bisulalign.gz" (9058686511 bytes)
*******************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:22 ERX202425.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      551949 Mar 30 17:28 ERX202425.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202425.graph
Output File (methyl)    :ERX202425.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202425.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202425.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   227697421 Mar 30 17:40 ERX202425.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    97154234 Mar 30 17:40 ERX202425.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   254999686 Mar 30 17:40 ERX202425.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    757997 Mar 30 18:07 ERX202425.hmr
-rw-r--r-- 1 okishinya so-ddmku     42813 Mar 30 18:07 ERX202425.pmd
-rw-r--r-- 1 okishinya so-ddmku   9177042 Mar 30 18:07 ERX202425.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 152799515 Mar 30 18:10 ERX202425.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 143630797 Mar 30 18:08 ERX202425.cpg.methyl.bw

=-=-=num_reads	57543800
=-=-=mapping_rate_1	0.89
=-=-=mapping_rate_2	0.884
=-=-=methyl_rate_cpg_total	0.613
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	31639
=-=-=partial_methyl_region	1789
=-=-=high_methyl_region	382294
=-=-=coverage	2.9686
=-=-=end	210330_18:10:46
=-=-=duration	3.263